{ "type": "genome", "identifier": "GCF_020866925.1", "organism": "Noviluteimonas lactosilytica", "title": "Noviluteimonas lactosilytica", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Nanyang Normal University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_020866925.1", "bioproject": "PRJNA224116", "biosample": "SAMN22629874", "wgs_master": "JAJGAK000000000.1", "refseq_category": "reference genome", "taxid": "2888523", "species_taxid": "2888523", "organism_name": "Noviluteimonas lactosilytica", "infraspecific_name": "strain=A6", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/11/15", "asm_name": "ASM2086692v1", "asm_submitter": "Nanyang Normal University", "gbrs_paired_asm": "GCA_020866925.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/020/866/925/GCF_020866925.1_ASM2086692v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3423651", "genome_size_ungapped": "3423365", "gc_percent": "67.000000", "replicon_count": "0", "scaffold_count": "11", "contig_count": "11", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_020866925.1-RS_2024_05_06", "annotation_date": "2024-05-06", "total_gene_count": "3305", "protein_coding_gene_count": "3207", "non_coding_gene_count": "55", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-11-15", "dateModified": "2021-11-15", "datePublished": "2021-11-15", "_annotation": { "sample_count": 1, "sample_organism": [ "Noviluteimonas lactosilytica" ], "sample_taxid": [ "2888523" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Zhenping" ], "sample_host_location_id": [], "data_size": "0.921 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3423651", "Number of Sequences": "11", "Longest Sequences (bp)": "1922247", "N50 (bp)": "1922247", "Gap Ratio (%)": "0.008354", "GCcontent (%)": "67.2", "Number of CDSs": "3283", "Average Protein Length": "321.4", "Coding Ratio (%)": "92.5", "Number of rRNAs": "5", "Number of tRNAs": "49", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Lysobacter gilvus", "strain": "strain=HX-5-24", "accession": "GCA_009740395.1", "taxid": 2682097, "species_taxid": 2682097, "relation_to_type": "type", "validated": true, "ani": 86.1038, "matched_fragments": 843, "total_fragments": 1135, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter dokdonensis", "strain": "strain=DS-58", "accession": "GCA_000770795.1", "taxid": 414050, "species_taxid": 414050, "relation_to_type": "type", "validated": true, "ani": 85.9616, "matched_fragments": 827, "total_fragments": 1135, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter panacisoli", "strain": "strain=JCM 19212", "accession": "GCA_009765165.1", "taxid": 1255263, "species_taxid": 1255263, "relation_to_type": "type", "validated": true, "ani": 81.4812, "matched_fragments": 638, "total_fragments": 1135, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter soli", "strain": "strain=KCTC 22011", "accession": "GCA_003382285.1", "taxid": 453783, "species_taxid": 453783, "relation_to_type": "type", "validated": true, "ani": 81.3495, "matched_fragments": 643, "total_fragments": 1135, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vulcaniibacterium gelatinicum", "strain": "strain=R-5-52-3", "accession": "GCA_008033445.1", "taxid": 2598725, "species_taxid": 2598725, "relation_to_type": "type", "validated": true, "ani": 81.3469, "matched_fragments": 522, "total_fragments": 1135, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter arenosi", "strain": "strain=R7", "accession": "GCA_016613475.2", "taxid": 2795387, "species_taxid": 2795387, "relation_to_type": "type", "validated": true, "ani": 80.9607, "matched_fragments": 584, "total_fragments": 1135, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermomonas aquatica", "strain": "strain=SY21", "accession": "GCA_006337105.1", "taxid": 2202149, "species_taxid": 2202149, "relation_to_type": "type", "validated": true, "ani": 80.8907, "matched_fragments": 542, "total_fragments": 1135, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas lumbrici", "strain": "strain=1.1416", "accession": "GCA_006476065.1", "taxid": 2559601, "species_taxid": 2559601, "relation_to_type": "type", "validated": true, "ani": 80.87, "matched_fragments": 492, "total_fragments": 1135, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter segetis", "strain": "strain=17J68-2", "accession": "GCA_004359965.1", "taxid": 2492394, "species_taxid": 2492394, "relation_to_type": "type", "validated": true, "ani": 80.8687, "matched_fragments": 508, "total_fragments": 1135, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas aquatica", "strain": "strain=RIB1-20", "accession": "GCA_022662575.1", "taxid": 450364, "species_taxid": 450364, "relation_to_type": "type", "validated": true, "ani": 80.6212, "matched_fragments": 563, "total_fragments": 1135, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas gilva", "strain": "strain=H23", "accession": "GCA_005239095.1", "taxid": 2572684, "species_taxid": 2572684, "relation_to_type": "type", "validated": true, "ani": 80.6016, "matched_fragments": 568, "total_fragments": 1135, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas cucumeris", "strain": "strain=CGMCC 1.10821", "accession": "GCA_007830035.1", "taxid": 985012, "species_taxid": 985012, "relation_to_type": "type", "validated": true, "ani": 80.5341, "matched_fragments": 553, "total_fragments": 1135, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoxanthomonas sangjuensis", "strain": "strain=DSM 28345", "accession": "GCA_010211755.1", "taxid": 1503750, "species_taxid": 1503750, "relation_to_type": "type", "validated": true, "ani": 80.4657, "matched_fragments": 536, "total_fragments": 1135, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter silvisoli", "strain": "strain=zong2l5", "accession": "GCA_003382365.1", "taxid": 2293254, "species_taxid": 2293254, "relation_to_type": "type", "validated": true, "ani": 80.4555, "matched_fragments": 589, "total_fragments": 1135, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas panaciterrae", "strain": "strain=Gsoil 068", "accession": "GCA_020511115.1", "taxid": 363885, "species_taxid": 363885, "relation_to_type": "type", "validated": true, "ani": 80.3949, "matched_fragments": 527, "total_fragments": 1135, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoxanthomonas helianthi", "strain": "strain=110414", "accession": "GCA_017939625.1", "taxid": 1453541, "species_taxid": 1453541, "relation_to_type": "type", "validated": true, "ani": 80.2468, "matched_fragments": 509, "total_fragments": 1135, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoxanthomonas japonensis", "strain": "strain=DSM 17109", "accession": "GCA_010093445.1", "taxid": 69284, "species_taxid": 69284, "relation_to_type": "type", "validated": true, "ani": 80.0215, "matched_fragments": 519, "total_fragments": 1135, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter chinensis", "strain": "strain=TLK-CK17", "accession": "GCA_021725675.1", "taxid": 2912247, "species_taxid": 2912247, "relation_to_type": "type", "validated": true, "ani": 79.9497, "matched_fragments": 522, "total_fragments": 1135, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter aestuarii", "strain": "strain=JCM 31130", "accession": "GCA_006546775.1", "taxid": 1706195, "species_taxid": 1706195, "relation_to_type": "type", "validated": true, "ani": 79.8441, "matched_fragments": 482, "total_fragments": 1135, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_009740395.1", "gtdb_species": "s__Lysobacter_A gilvus", "ani": 86.12, "matched_fragments": 842, "total_fragments": 1135, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Lysobacter_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000770795.1", "gtdb_species": "s__Lysobacter_A dokdonensis", "ani": 85.9801, "matched_fragments": 826, "total_fragments": 1135, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Lysobacter_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_018406645.1", "gtdb_species": "s__Lysobacter_A helvus", "ani": 84.8052, "matched_fragments": 787, "total_fragments": 1135, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Lysobacter_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_017308985.1", "gtdb_species": "s__Lysobacter sp017308985", "ani": 81.5152, "matched_fragments": 651, "total_fragments": 1135, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Lysobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_013362405.1", "gtdb_species": "s__JABFWF01 sp013362405", "ani": 81.5141, "matched_fragments": 462, "total_fragments": 1135, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__JABFWF01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014489475.1", "gtdb_species": "s__Lysobacter solisilvae", "ani": 81.484, "matched_fragments": 612, "total_fragments": 1135, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Lysobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003382285.1", "gtdb_species": "s__Lysobacter soli", "ani": 81.3637, "matched_fragments": 642, "total_fragments": 1135, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Lysobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.84", "min_intra_species_ani": "96.81", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.93", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_008033445.1", "gtdb_species": "s__Vulcaniibacterium_B gelatinicum", "ani": 81.3606, "matched_fragments": 521, "total_fragments": 1135, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Vulcaniibacterium_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016735495.2", "gtdb_species": "s__Lysobacter sp016735495", "ani": 81.2366, "matched_fragments": 624, "total_fragments": 1135, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Lysobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_006337105.1", "gtdb_species": "s__Thermomonas sp006337105", "ani": 80.8911, "matched_fragments": 542, "total_fragments": 1135, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Thermomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_011320095.1", "gtdb_species": "s__Luteimonas_B telluris", "ani": 80.8483, "matched_fragments": 486, "total_fragments": 1135, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Luteimonas_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000422305.1", "gtdb_species": "s__Luteimonas mephitis", "ani": 80.8355, "matched_fragments": 558, "total_fragments": 1135, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Luteimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_005502915.1", "gtdb_species": "s__SCMT01 sp005502915", "ani": 80.6746, "matched_fragments": 550, "total_fragments": 1135, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__SCMT01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_001428685.1", "gtdb_species": "s__Lysobacter sp001428685", "ani": 80.6168, "matched_fragments": 584, "total_fragments": 1135, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Lysobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.42", "min_intra_species_ani": "98.61", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.96", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_014395425.1", "gtdb_species": "s__Thermomonas brevis", "ani": 80.5193, "matched_fragments": 519, "total_fragments": 1135, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Thermomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_010211755.1", "gtdb_species": "s__Pseudoxanthomonas_A sangjuensis", "ani": 80.485, "matched_fragments": 534, "total_fragments": 1135, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Pseudoxanthomonas_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_013361435.1", "gtdb_species": "s__Lysobacter sp013361435", "ani": 80.3363, "matched_fragments": 520, "total_fragments": 1135, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Lysobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016789405.1", "gtdb_species": "s__SCMT01 sp016789405", "ani": 80.2961, "matched_fragments": 481, "total_fragments": 1135, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__SCMT01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_genome_taxon": [ "Noviluteimonas", "lactosilytica" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }