{ "type": "genome", "identifier": "GCF_020883455.1", "organism": "Spiribacter halobius", "title": "Spiribacter halobius", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Shandong University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_020883455.1", "bioproject": "PRJNA224116", "biosample": "SAMN22860966", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2182432", "species_taxid": "2182432", "organism_name": "Spiribacter halobius", "infraspecific_name": "strain=E85", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/11/18", "asm_name": "ASM2088345v1", "asm_submitter": "Shandong University", "gbrs_paired_asm": "GCA_020883455.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/020/883/455/GCF_020883455.1_ASM2088345v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4172350", "genome_size_ungapped": "4172350", "gc_percent": "69.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_020883455.1-RS_2024_09_02", "annotation_date": "2024-09-02", "total_gene_count": "3898", "protein_coding_gene_count": "3817", "non_coding_gene_count": "53", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-11-18", "dateModified": "2021-11-18", "datePublished": "2021-11-18", "_annotation": { "sample_count": 1, "sample_organism": [ "Spiribacter halobius" ], "sample_taxid": [ "2182432" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Weihai" ], "sample_host_location_id": [], "data_size": "1.132 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4172350", "Number of Sequences": "1", "Longest Sequences (bp)": "4172350", "N50 (bp)": "4172350", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "69.7", "Number of CDSs": "3916", "Average Protein Length": "314.1", "Coding Ratio (%)": "88.4", "Number of rRNAs": "3", "Number of tRNAs": "52", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Arhodomonas aquaeolei", "strain": "strain=DSM 8974", "accession": "GCA_000374645.1", "taxid": 2369, "species_taxid": 2369, "relation_to_type": "type", "validated": true, "ani": 79.2911, "matched_fragments": 443, "total_fragments": 1390, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spiribacter aquaticus", "strain": "strain=SP30", "accession": "GCA_007625215.1", "taxid": 1935996, "species_taxid": 1935996, "relation_to_type": "type", "validated": true, "ani": 78.5828, "matched_fragments": 278, "total_fragments": 1390, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halorhodospira neutriphila", "strain": "strain=DSM 15116", "accession": "GCA_016584055.1", "taxid": 168379, "species_taxid": 168379, "relation_to_type": "type", "validated": true, "ani": 78.5318, "matched_fragments": 248, "total_fragments": 1390, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spiribacter vilamensis", "strain": "strain=DSM 21056", "accession": "GCA_007625165.1", "taxid": 531306, "species_taxid": 531306, "relation_to_type": "type", "validated": true, "ani": 78.2181, "matched_fragments": 255, "total_fragments": 1390, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spiribacter curvatus", "strain": "strain=UAH-SP71", "accession": "GCA_000485905.1", "taxid": 1335757, "species_taxid": 1335757, "relation_to_type": "type", "validated": true, "ani": 78.2159, "matched_fragments": 191, "total_fragments": 1390, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spiribacter vilamensis", "strain": "strain=DSM 21056", "accession": "GCA_004217415.1", "taxid": 531306, "species_taxid": 531306, "relation_to_type": "type", "validated": true, "ani": 78.1717, "matched_fragments": 256, "total_fragments": 1390, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thioalbus denitrificans", "strain": "strain=DSM 26407", "accession": "GCA_003337735.1", "taxid": 547122, "species_taxid": 547122, "relation_to_type": "type", "validated": true, "ani": 78.0406, "matched_fragments": 276, "total_fragments": 1390, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spiribacter salinus", "strain": "strain=M19-40", "accession": "GCA_000319575.2", "taxid": 1335746, "species_taxid": 1335746, "relation_to_type": "type", "validated": true, "ani": 77.7032, "matched_fragments": 185, "total_fragments": 1390, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Inmirania thermothiophila", "strain": "strain=DSM 100275", "accession": "GCA_003751635.1", "taxid": 1750597, "species_taxid": 1750597, "relation_to_type": "type", "validated": true, "ani": 77.663, "matched_fragments": 322, "total_fragments": 1390, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylonatrum kenyense", "strain": "strain=AMT 1", "accession": "GCA_023195885.1", "taxid": 455253, "species_taxid": 455253, "relation_to_type": "type", "validated": true, "ani": 77.5955, "matched_fragments": 192, "total_fragments": 1390, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas campaniensis", "strain": "strain=5AG", "accession": "GCA_014193375.1", "taxid": 213554, "species_taxid": 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