{ "type": "genome", "identifier": "GCF_020889785.1", "organism": "Bradyrhizobium acaciae", "title": "Bradyrhizobium acaciae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Pretoria", "publication": [ {} ], "properties": { "assembly_accession": "GCF_020889785.1", "bioproject": "PRJNA224116", "biosample": "SAMN15826096", "wgs_master": "JACMYK000000000.1", "refseq_category": "reference genome", "taxid": "2683706", "species_taxid": "2683706", "organism_name": "Bradyrhizobium acaciae", "infraspecific_name": "strain=10BB", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/11/19", "asm_name": "ASM2088978v1", "asm_submitter": "University of Pretoria", "gbrs_paired_asm": "GCA_020889785.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/020/889/785/GCF_020889785.1_ASM2088978v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "8471967", "genome_size_ungapped": "8471967", "gc_percent": "63.500000", "replicon_count": "0", "scaffold_count": "334", "contig_count": "334", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_020889785.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "8156", "protein_coding_gene_count": "7761", "non_coding_gene_count": "67", "pubmed_id": "34757168" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-11-19", "dateModified": "2021-11-19", "datePublished": "2021-11-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Bradyrhizobium acaciae" ], "sample_taxid": [ "2683706" ], "sample_host_organism": [ "Acacia dealbata" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Africa" ], "sample_host_location_id": [], "data_size": "2.358 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "8471967", "Number of Sequences": "334", "Longest Sequences (bp)": "253799", "N50 (bp)": "47328", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "63.7", "Number of CDSs": "7780", "Average Protein Length": "293.9", "Coding Ratio (%)": "81.0", "Number of rRNAs": "3", "Number of tRNAs": "58", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Bradyrhizobium acaciae", "strain": "strain=10BB", "accession": "GCA_020889785.1", "taxid": 2683706, "species_taxid": 2683706, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2635, "total_fragments": 2653, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Bradyrhizobium uaiense", "strain": "strain=UFLA03-164", "accession": "GCA_010811875.1", "taxid": 2594946, "species_taxid": 2594946, "relation_to_type": "type", "validated": true, "ani": 95.7406, "matched_fragments": 2136, "total_fragments": 2653, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Bradyrhizobium oropedii", "strain": "strain=Pear76", "accession": "GCA_020889685.1", "taxid": 1571201, "species_taxid": 1571201, "relation_to_type": "type", "validated": true, "ani": 95.1257, "matched_fragments": 2043, "total_fragments": 2653, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Bradyrhizobium viridifuturi", "strain": "strain=SEMIA 690", "accession": "GCA_001238275.1", "taxid": 1654716, "species_taxid": 1654716, "relation_to_type": "type", "validated": true, "ani": 90.9713, "matched_fragments": 2077, "total_fragments": 2653, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium quebecense", "strain": "strain=66S1MB, /ecotype=symbiovar septentrionalis", "accession": "GCA_013373795.3", "taxid": 2748629, "species_taxid": 2748629, "relation_to_type": "type", "validated": true, "ani": 90.961, "matched_fragments": 2080, "total_fragments": 2653, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium embrapense", "strain": "strain=SEMIA 6208", "accession": "GCA_001189235.2", "taxid": 630921, "species_taxid": 630921, "relation_to_type": "type", "validated": true, "ani": 90.9357, "matched_fragments": 2141, "total_fragments": 2653, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium altum", "strain": "strain=Pear77", "accession": "GCA_020889705.1", "taxid": 1571202, "species_taxid": 1571202, "relation_to_type": "type", "validated": true, "ani": 90.862, "matched_fragments": 1966, "total_fragments": 2653, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium elkanii", "strain": "strain=USDA 76", "accession": "GCA_000379145.1", "taxid": 29448, "species_taxid": 29448, "relation_to_type": "type", "validated": true, "ani": 90.567, "matched_fragments": 2062, "total_fragments": 2653, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium elkanii", "strain": "strain=USDA 76", "accession": "GCA_023278185.1", "taxid": 29448, "species_taxid": 29448, "relation_to_type": "type", "validated": true, "ani": 90.4814, "matched_fragments": 2082, "total_fragments": 2653, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium pachyrhizi", "strain": "strain=PAC 48", "accession": "GCA_001189245.1", "taxid": 280333, "species_taxid": 280333, "relation_to_type": "type", "validated": true, "ani": 90.321, "matched_fragments": 2020, "total_fragments": 2653, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium 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