{ "type": "genome", "identifier": "GCF_020907985.1", "organism": "Kitasatospora humi", "title": "Kitasatospora humi", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Kasetsart University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_020907985.1", "bioproject": "PRJNA224116", "biosample": "SAMN23014029", "wgs_master": "JAJJPA000000000.1", "refseq_category": "reference genome", "taxid": "2893891", "species_taxid": "2893891", "organism_name": "Kitasatospora humi", "infraspecific_name": "strain=RB6PN24", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/11/21", "asm_name": "ASM2090798v1", "asm_submitter": "Kasetsart University", "gbrs_paired_asm": "GCA_020907985.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/020/907/985/GCF_020907985.1_ASM2090798v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "8094094", "genome_size_ungapped": "8094094", "gc_percent": "72.000000", "replicon_count": "0", "scaffold_count": "150", "contig_count": "150", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_020907985.1-RS_2024_08_29", "annotation_date": "2024-08-29", "total_gene_count": "7381", "protein_coding_gene_count": "7138", "non_coding_gene_count": "87", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-11-21", "dateModified": "2021-11-21", "datePublished": "2021-11-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Kitasatospora humi" ], "sample_taxid": [ "2893891" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Thailand" ], "sample_host_location_id": [], "data_size": "2.164 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 1.04, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "8094094", "Number of Sequences": "150", "Longest Sequences (bp)": "529672", "N50 (bp)": "134447", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "72.1", "Number of CDSs": "7426", "Average Protein Length": "308.3", "Coding Ratio (%)": "84.8", "Number of rRNAs": "1", "Number of tRNAs": "101", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Kitasatospora humi", "strain": "strain=RB6PN24", "accession": "GCA_020907985.1", "taxid": 2893891, "species_taxid": 2893891, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2618, "total_fragments": 2621, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Kitasatospora acidiphila", "strain": "strain=MMS16-CNU292", "accession": "GCA_006636205.1", "taxid": 2567942, "species_taxid": 2567942, "relation_to_type": "type", "validated": true, "ani": 91.6474, "matched_fragments": 1933, "total_fragments": 2621, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kitasatospora viridis", "strain": "strain=DSM 44826", "accession": "GCA_007829815.1", "taxid": 281105, "species_taxid": 281105, "relation_to_type": "type", "validated": true, "ani": 85.9988, "matched_fragments": 1749, "total_fragments": 2621, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kitasatospora azatica", "strain": "strain=KCTC 9699", "accession": "GCA_000744785.1", "taxid": 58347, "species_taxid": 58347, "relation_to_type": "type", "validated": true, "ani": 85.6256, "matched_fragments": 1542, "total_fragments": 2621, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kitasatospora kifunensis", "strain": "strain=DSM 41654", "accession": "GCA_014203855.1", "taxid": 58351, "species_taxid": 58351, "relation_to_type": "type", "validated": true, "ani": 84.6092, "matched_fragments": 1573, "total_fragments": 2621, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kitasatospora mediocidica", "strain": "strain=KCTC 9733", "accession": "GCA_000744225.1", "taxid": 58352, "species_taxid": 58352, "relation_to_type": "type", "validated": true, "ani": 83.5849, "matched_fragments": 1464, "total_fragments": 2621, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kitasatospora paracochleata", "strain": "strain=DSM 41656", "accession": "GCA_024172095.1", "taxid": 58354, "species_taxid": 58354, "relation_to_type": "type", "validated": true, "ani": 82.6358, "matched_fragments": 1376, "total_fragments": 2621, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kitasatospora purpeofusca", "strain": "strain=NRRL B-1817", "accession": "GCA_000718025.1", "taxid": 67352, "species_taxid": 67352, "relation_to_type": "type", "validated": true, "ani": 82.2469, "matched_fragments": 1384, "total_fragments": 2621, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kitasatospora setae", "strain": "strain=NRRL B-16185", "accession": "GCA_000716965.1", "taxid": 2066, "species_taxid": 2066, "relation_to_type": "type", "validated": true, "ani": 82.1571, "matched_fragments": 1288, "total_fragments": 2621, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kitasatospora setae", "strain": "strain=KM-6054", "accession": "GCA_000269985.1", "taxid": 2066, "species_taxid": 2066, "relation_to_type": "type", "validated": true, "ani": 82.1385, "matched_fragments": 1318, "total_fragments": 2621, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptacidiphilus jiangxiensis", "strain": "strain=CGMCC 4.1857", "accession": "GCA_900109465.1", "taxid": 235985, "species_taxid": 235985, "relation_to_type": "type", "validated": true, "ani": 79.9594, "matched_fragments": 1140, "total_fragments": 2621, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptacidiphilus jiangxiensis", "strain": "strain=NBRC 100920", "accession": "GCA_000787795.1", "taxid": 235985, "species_taxid": 235985, "relation_to_type": "type", "validated": true, "ani": 79.8148, "matched_fragments": 1156, "total_fragments": 2621, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces parmotrematis", "strain": "strain=Ptm05", "accession": "GCA_019890615.1", "taxid": 2873249, "species_taxid": 2873249, "relation_to_type": "type", "validated": true, "ani": 79.5414, "matched_fragments": 955, "total_fragments": 2621, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces rubrisoli", "strain": "strain=DSM 42083", "accession": "GCA_024436055.1", "taxid": 1387313, "species_taxid": 1387313, "relation_to_type": "type", "validated": true, "ani": 79.5299, "matched_fragments": 948, "total_fragments": 2621, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinacidiphila alni", "strain": "strain=CGMCC 4.3510", "accession": "GCA_900112845.1", "taxid": 380248, "species_taxid": 380248, "relation_to_type": "type", "validated": true, "ani": 78.9597, "matched_fragments": 1006, "total_fragments": 2621, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces spinosus", "strain": "strain=SBTS01", "accession": "GCA_020400655.1", "taxid": 2872623, "species_taxid": 2872623, "relation_to_type": "type", "validated": true, "ani": 78.6009, "matched_fragments": 1021, "total_fragments": 2621, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces xiamenensis", "strain": "strain=318", "accession": "GCA_000993785.3", "taxid": 408015, "species_taxid": 408015, "relation_to_type": "type", "validated": true, 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95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014203855.1", "gtdb_species": "s__Kitasatospora kifunensis", "ani": 84.5572, "matched_fragments": 1581, "total_fragments": 2621, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Kitasatospora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000744225.1", "gtdb_species": "s__Kitasatospora mediocidica", "ani": 83.6036, "matched_fragments": 1461, "total_fragments": 2621, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Kitasatospora", "ani_circumscription_radius": 95.0, 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