{ "type": "genome", "identifier": "GCF_020908015.1", "organism": "Clostridium aromativorans", "title": "Clostridium aromativorans", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Wuliangye Yibin Co., Ltd. Yibin", "publication": [ {} ], "properties": { "assembly_accession": "GCF_020908015.1", "bioproject": "PRJNA224116", "biosample": "SAMN23040330", "wgs_master": "JAJJPB000000000.1", "refseq_category": "reference genome", "taxid": "2836848", "species_taxid": "2836848", "organism_name": "Clostridium aromativorans", "infraspecific_name": "strain=WLY-B-L2", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/11/21", "asm_name": "ASM2090801v1", "asm_submitter": "Wuliangye Yibin Co., Ltd. Yibin", "gbrs_paired_asm": "GCA_020908015.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/020/908/015/GCF_020908015.1_ASM2090801v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3881051", "genome_size_ungapped": "3881051", "gc_percent": "34.000000", "replicon_count": "0", "scaffold_count": "74", "contig_count": "74", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_020908015.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "3804", "protein_coding_gene_count": "3661", "non_coding_gene_count": "77", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-11-21", "dateModified": "2021-11-21", "datePublished": "2021-11-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Clostridium aromativorans" ], "sample_taxid": [ "2836848" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Yibin" ], "sample_host_location_id": [], "data_size": "1.083 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3881051", "Number of Sequences": "74", "Longest Sequences (bp)": "552957", "N50 (bp)": "113575", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "34.2", "Number of CDSs": "3681", "Average Protein Length": "298.9", "Coding Ratio (%)": "85.0", "Number of rRNAs": "3", "Number of tRNAs": "68", "Number of CRISPRs": "10" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Clostridium luticellarii", "strain": "strain=DSM 29923", 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84023, "relation_to_type": "suspected-type", "validated": true, "ani": 78.5187, "matched_fragments": 379, "total_fragments": 1258, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium autoethanogenum", "strain": "strain=DSM 10061", "accession": "GCA_000484505.2", "taxid": 84023, "species_taxid": 84023, "relation_to_type": "suspected-type", "validated": true, "ani": 78.4589, "matched_fragments": 386, "total_fragments": 1258, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium autoethanogenum", "strain": "strain=DSM 10061", "accession": "GCA_000427255.1", "taxid": 84023, "species_taxid": 84023, "relation_to_type": "suspected-type", "validated": true, "ani": 78.4555, "matched_fragments": 371, "total_fragments": 1258, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium ljungdahlii", "strain": "strain=DSM 13528", "accession": "GCA_000143685.1", "taxid": 1538, "species_taxid": 1538, 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"validated": true, "ani": 77.1264, "matched_fragments": 215, "total_fragments": 1258, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium muellerianum", "strain": "strain=P21", "accession": "GCA_012926525.1", "taxid": 2716538, "species_taxid": 2716538, "relation_to_type": "type", "validated": true, "ani": 76.9995, "matched_fragments": 202, "total_fragments": 1258, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium aciditolerans", "strain": "strain=DSM 17425", "accession": "GCA_016316925.1", "taxid": 339861, "species_taxid": 339861, "relation_to_type": "type", "validated": true, "ani": 76.8349, "matched_fragments": 173, "total_fragments": 1258, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium thailandense", "strain": "strain=PL3", "accession": "GCA_019207025.1", "taxid": 2794346, "species_taxid": 2794346, "relation_to_type": "type", "validated": true, "ani": 76.57, "matched_fragments": 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"vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Clostridium", "aromativorans" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }