{ "type": "genome", "identifier": "GCF_020966755.1", "organism": "Blastopirellula sediminis", "title": "Blastopirellula sediminis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "The Institute of Microbiology of the Chinese Academy of Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_020966755.1", "bioproject": "PRJNA224116", "biosample": "SAMN23076854", "wgs_master": "JAJKFT000000000.1", "refseq_category": "reference genome", "taxid": "2894196", "species_taxid": "2894196", "organism_name": "Blastopirellula sediminis", "infraspecific_name": "strain=JC732", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/11/23", "asm_name": "ASM2096675v1", "asm_submitter": "The Institute of Microbiology of the Chinese Academy of Sciences", "gbrs_paired_asm": "GCA_020966755.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/020/966/755/GCF_020966755.1_ASM2096675v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7051236", "genome_size_ungapped": "7050792", "gc_percent": "59.000000", "replicon_count": "0", "scaffold_count": "10", "contig_count": "10", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_020966755.1-RS_2024_10_11", "annotation_date": "2024-10-11", "total_gene_count": "5616", "protein_coding_gene_count": "5517", "non_coding_gene_count": "81", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-11-23", "dateModified": "2021-11-23", "datePublished": "2021-11-23", "_annotation": { "sample_count": 1, "sample_organism": [ "Blastopirellula sediminis" ], "sample_taxid": [ "2894196" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "India:Neil Island" ], "sample_host_location_id": [], "data_size": "1.972 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7051236", "Number of Sequences": "10", "Longest Sequences (bp)": "4071442", "N50 (bp)": "4071442", "Gap Ratio (%)": "0.006297", "GCcontent (%)": "58.9", "Number of CDSs": "5623", "Average Protein Length": "364.1", "Coding Ratio (%)": "87.1", "Number of rRNAs": "1", "Number of tRNAs": "72", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Blastopirellula retiformator", "strain": "strain=Enr8", "accession": "GCA_007859755.1", "taxid": 2527970, "species_taxid": 2527970, "relation_to_type": "type", "validated": true, "ani": 83.861, "matched_fragments": 1545, "total_fragments": 2346, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Blastopirellula marina", "strain": "strain=DSM 3645", "accession": "GCA_000153105.1", "taxid": 124, "species_taxid": 124, "relation_to_type": "suspected-type", "validated": true, "ani": 81.2841, "matched_fragments": 1363, "total_fragments": 2346, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bremerella volcania", "strain": "strain=Pan97", "accession": "GCA_007748115.1", "taxid": 2527984, "species_taxid": 2527984, "relation_to_type": "type", "validated": true, "ani": 76.5793, "matched_fragments": 341, "total_fragments": 2346, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bremerella alba", "strain": "strain=FF15", "accession": "GCA_013618625.1", "taxid": 980252, "species_taxid": 980252, "relation_to_type": "type", "validated": true, "ani": 76.2535, "matched_fragments": 205, "total_fragments": 2346, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lacipirellula parvula", "strain": "strain=PX69", "accession": "GCA_009177095.1", "taxid": 2650471, "species_taxid": 2650471, "relation_to_type": "type", "validated": true, "ani": 76.1605, "matched_fragments": 171, "total_fragments": 2346, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Posidoniimonas corsicana", "strain": "strain=KOR34", "accession": "GCA_007859765.1", "taxid": 1938618, "species_taxid": 1938618, "relation_to_type": "type", "validated": true, "ani": 75.956, "matched_fragments": 141, "total_fragments": 2346, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudobythopirellula maris", "strain": "strain=Mal64", "accession": "GCA_007859945.1", "taxid": 2527991, "species_taxid": 2527991, "relation_to_type": "type", "validated": true, "ani": 75.8669, "matched_fragments": 133, "total_fragments": 2346, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lacipirellula limnantheis", "strain": "strain=I41", "accession": "GCA_007746075.1", "taxid": 2528024, "species_taxid": 2528024, "relation_to_type": "type", "validated": true, "ani": 75.8284, "matched_fragments": 150, "total_fragments": 2346, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseimaritima ulvae", "strain": "strain=DSM 25454", "accession": "GCA_001642915.1", "taxid": 980254, "species_taxid": 980254, "relation_to_type": "type", "validated": true, "ani": 75.7882, "matched_fragments": 111, "total_fragments": 2346, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseimaritima ulvae", "strain": "strain=UC8", "accession": "GCA_008065135.1", "taxid": 980254, "species_taxid": 980254, "relation_to_type": "type", "validated": true, "ani": 75.7791, "matched_fragments": 110, "total_fragments": 2346, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseimaritima sediminicola", "strain": "strain=JC651", "accession": "GCA_009618275.1", "taxid": 2662066, "species_taxid": 2662066, "relation_to_type": "type", "validated": true, "ani": 75.7099, "matched_fragments": 113, "total_fragments": 2346, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aeoliella mucimassa", "strain": "strain=Pan181", "accession": "GCA_007748035.1", "taxid": 2527972, "species_taxid": 2527972, "relation_to_type": "type", "validated": true, "ani": 75.6633, "matched_fragments": 105, "total_fragments": 2346, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodopirellula pilleata", "strain": "strain=Pla100", "accession": "GCA_007859915.1", "taxid": 2714738, "species_taxid": 2714738, "relation_to_type": "type", "validated": true, "ani": 75.4502, "matched_fragments": 92, "total_fragments": 2346, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_007859755.1", "gtdb_species": "s__Blastopirellula retiformator", "ani": 83.8578, "matched_fragments": 1546, "total_fragments": 2346, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__Pirellulaceae;g__Blastopirellula", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000153105.1", "gtdb_species": "s__Blastopirellula marina", "ani": 81.2874, "matched_fragments": 1362, "total_fragments": 2346, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__Pirellulaceae;g__Blastopirellula", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016124445.1", "gtdb_species": "s__Bremerella sp016124445", "ani": 76.8321, "matched_fragments": 219, "total_fragments": 2346, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__Pirellulaceae;g__Bremerella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002967715.1", "gtdb_species": "s__Bremerella marina_B", "ani": 76.7646, "matched_fragments": 300, "total_fragments": 2346, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__Pirellulaceae;g__Bremerella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_007748115.1", "gtdb_species": "s__Bremerella volcania", "ani": 76.5864, "matched_fragments": 340, "total_fragments": 2346, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__Pirellulaceae;g__Bremerella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003335505.1", "gtdb_species": "s__Bremerella cremea_A", "ani": 76.4491, "matched_fragments": 234, "total_fragments": 2346, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__Pirellulaceae;g__Bremerella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_013822725.1", "gtdb_species": "s__Lacipirellula sp013822725", "ani": 76.0764, "matched_fragments": 139, "total_fragments": 2346, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__Lacipirellulaceae;g__Lacipirellula", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016793115.1", "gtdb_species": "s__PNKZ01 sp016793115", "ani": 75.8466, "matched_fragments": 170, "total_fragments": 2346, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__PNKZ01;g__PNKZ01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_008065135.1", "gtdb_species": "s__Roseimaritima ulvae", "ani": 75.7791, "matched_fragments": 110, "total_fragments": 2346, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__Pirellulaceae;g__Roseimaritima", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.98", "min_intra_species_ani": "99.98", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_018242585.1", "gtdb_species": "s__JAFEBQ01 sp018242585", "ani": 75.7248, "matched_fragments": 138, "total_fragments": 2346, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__PNKZ01;g__JAFEBQ01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009618275.1", "gtdb_species": "s__Roseimaritima sp009618275", "ani": 75.7116, "matched_fragments": 113, "total_fragments": 2346, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__Pirellulaceae;g__Roseimaritima", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_007859915.1", "gtdb_species": "s__Rhodopirellula pilleata", "ani": 75.4502, "matched_fragments": 92, "total_fragments": 2346, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__Pirellulaceae;g__Rhodopirellula", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016936015.1", "gtdb_species": "s__JAFGPV01 sp016936015", "ani": 75.3515, "matched_fragments": 59, "total_fragments": 2346, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__Thermoguttaceae;g__JAFGPV01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.078, "cell_length": 0.01, "doubling_h": null, "growth_tmp": 30.0, "optimum_tmp": 30.0, "optimum_ph": 7.0, "genome_size": 6653746.0, "gc_content": null, "coding_genes": null, "rRNA16S_genes": 2.0, "tRNA_genes": null, "gram_stain": 0.0, "sporulation": 0.0, "motility": 1.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": 0.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 1.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Blastopirellula", "sediminis" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }