{
    "type": "genome",
    "identifier": "GCF_020991375.1",
    "organism": "Glycomyces amatae",
    "title": "Glycomyces amatae",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "National Center for Genetic Engineering and Biotechnology (BIOTEC)",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_020991375.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN23246193",
        "wgs_master": "JAJLQZ000000000.1",
        "refseq_category": "reference genome",
        "taxid": "2881355",
        "species_taxid": "2881355",
        "organism_name": "Glycomyces amatae",
        "infraspecific_name": "strain=A-F 0318",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/11/28",
        "asm_name": "ASM2099137v1",
        "asm_submitter": "National Center for Genetic Engineering and Biotechnology (BIOTEC)",
        "gbrs_paired_asm": "GCA_020991375.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/020/991/375/GCF_020991375.1_ASM2099137v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "6172672",
        "genome_size_ungapped": "6172672",
        "gc_percent": "71.500000",
        "replicon_count": "0",
        "scaffold_count": "69",
        "contig_count": "69",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_020991375.1-RS_2024_08_08",
        "annotation_date": "2024-08-08",
        "total_gene_count": "5736",
        "protein_coding_gene_count": "5596",
        "non_coding_gene_count": "54",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-11-28",
    "dateModified": "2021-11-28",
    "datePublished": "2021-11-28",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Glycomyces amatae"
        ],
        "sample_taxid": [
            "2881355"
        ],
        "sample_host_organism": [
            "Amata sperbius"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Thailand"
        ],
        "sample_host_location_id": [],
        "data_size": "1.649 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 5.21,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "6172672",
        "Number of Sequences": "69",
        "Longest Sequences (bp)": "601890",
        "N50 (bp)": "241204",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "71.7",
        "Number of CDSs": "5764",
        "Average Protein Length": "313.5",
        "Coding Ratio (%)": "87.8",
        "Number of rRNAs": "0",
        "Number of tRNAs": "60",
        "Number of CRISPRs": "6"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Glycomyces paridis",
                "strain": "strain=CPCC 204357",
                "accession": "GCA_004912155.1",
                "taxid": 2126555,
                "species_taxid": 2126555,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.4376,
                "matched_fragments": 1298,
                "total_fragments": 2028,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Glycomyces sambucus",
                "strain": "strain=CGMCC 4.3147",
                "accession": "GCA_900102815.1",
                "taxid": 380244,
                "species_taxid": 380244,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.2441,
                "matched_fragments": 1382,
                "total_fragments": 2028,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Glycomyces dulcitolivorans",
                "strain": "strain=SJ-25",
                "accession": "GCA_003265355.1",
                "taxid": 2200759,
                "species_taxid": 2200759,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.2149,
                "matched_fragments": 1197,
                "total_fragments": 2028,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Glycomyces terrestris",
                "strain": "strain=YIM 121974",
                "accession": "GCA_003933745.1",
                "taxid": 2493553,
                "species_taxid": 2493553,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.1832,
                "matched_fragments": 1314,
                "total_fragments": 2028,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Glycomyces albidus",
                "strain": "strain=NEAU-7082",
                "accession": "GCA_009451885.1",
                "taxid": 2656774,
                "species_taxid": 2656774,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.986,
                "matched_fragments": 1337,
                "total_fragments": 2028,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Glycomyces artemisiae",
                "strain": "strain=CGMCC 4.7067",
                "accession": "GCA_003002955.1",
                "taxid": 1076443,
                "species_taxid": 1076443,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.9624,
                "matched_fragments": 1354,
                "total_fragments": 2028,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 5.21,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_900101745.1",
                "gtdb_species": "s__Glycomyces harbinensis",
                "ani": 89.4394,
                "matched_fragments": 1503,
                "total_fragments": 2028,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Micromonosporaceae;g__Glycomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000719515.1",
                "gtdb_species": "s__Glycomyces sp000719515",
                "ani": 86.5699,
                "matched_fragments": 1239,
                "total_fragments": 2028,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Micromonosporaceae;g__Glycomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.99",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_004912155.1",
                "gtdb_species": "s__Glycomyces paridis",
                "ani": 86.4413,
                "matched_fragments": 1297,
                "total_fragments": 2028,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Micromonosporaceae;g__Glycomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900102815.1",
                "gtdb_species": "s__Glycomyces sambucus",
                "ani": 86.2337,
                "matched_fragments": 1383,
                "total_fragments": 2028,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Micromonosporaceae;g__Glycomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003265355.1",
                "gtdb_species": "s__Glycomyces dulcitolivorans",
                "ani": 86.2136,
                "matched_fragments": 1196,
                "total_fragments": 2028,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Micromonosporaceae;g__Glycomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003933745.1",
                "gtdb_species": "s__Glycomyces terrestris",
                "ani": 86.2099,
                "matched_fragments": 1311,
                "total_fragments": 2028,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Micromonosporaceae;g__Glycomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003002955.1",
                "gtdb_species": "s__Glycomyces artemisiae",
                "ani": 85.9635,
                "matched_fragments": 1354,
                "total_fragments": 2028,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Micromonosporaceae;g__Glycomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.80",
                "min_intra_species_ani": "97.80",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_009451885.1",
                "gtdb_species": "s__Glycomyces albidus",
                "ani": 85.9603,
                "matched_fragments": 1340,
                "total_fragments": 2028,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Micromonosporaceae;g__Glycomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_017592475.1",
                "gtdb_species": "s__Glycomyces sp017592475",
                "ani": 85.7847,
                "matched_fragments": 1248,
                "total_fragments": 2028,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Micromonosporaceae;g__Glycomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_016918015.1",
                "gtdb_species": "s__Glycomyces sp016918015",
                "ani": 85.395,
                "matched_fragments": 1264,
                "total_fragments": 2028,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Micromonosporaceae;g__Glycomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.824,
        "cell_length": -0.426,
        "doubling_h": null,
        "growth_tmp": 29.933,
        "optimum_tmp": 27.571,
        "optimum_ph": 7.0,
        "genome_size": 5688929.8,
        "gc_content": 70.25,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 1.0,
        "sporulation": 1.0,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Glycomyces",
        "amatae"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}