{ "type": "genome", "identifier": "GCF_021026195.1", "organism": "Comamonas koreensis", "title": "Comamonas koreensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "The Institute of Microbiology of the Chinese Academy of Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_021026195.1", "bioproject": "PRJNA224116", "biosample": "SAMN23377870", "wgs_master": "JAJNCT000000000.1", "refseq_category": "reference genome", "taxid": "160825", "species_taxid": "160825", "organism_name": "Comamonas koreensis", "infraspecific_name": "strain=KCTC 12005", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/12/01", "asm_name": "ASM2102619v1", "asm_submitter": "The Institute of Microbiology of the Chinese Academy of Sciences", "gbrs_paired_asm": "GCA_021026195.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/021/026/195/GCF_021026195.1_ASM2102619v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5101082", "genome_size_ungapped": "5100749", "gc_percent": "63.000000", "replicon_count": "0", "scaffold_count": "47", "contig_count": "47", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_021026195.1-RS_2024_12_11", "annotation_date": "2024-12-11", "total_gene_count": "4691", "protein_coding_gene_count": "4572", "non_coding_gene_count": "78", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-12-01", "dateModified": "2021-12-01", "datePublished": "2021-12-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Comamonas koreensis" ], "sample_taxid": [ "160825" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "1.410 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5101082", "Number of Sequences": "47", "Longest Sequences (bp)": "979292", "N50 (bp)": "369092", "Gap Ratio (%)": "0.006528", "GCcontent (%)": "63.2", "Number of CDSs": "4595", "Average Protein Length": "325.2", "Coding Ratio (%)": "87.9", "Number of rRNAs": "1", "Number of tRNAs": "78", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Comamonas koreensis", "strain": "strain=KCTC 12005", "accession": "GCA_021026195.1", "taxid": 160825, "species_taxid": 160825, 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"matched_fragments": 727, "total_fragments": 1681, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Comamonas aquatica", "strain": "strain=NBRC 14918", "accession": "GCA_000739875.1", "taxid": 225991, "species_taxid": 225991, "relation_to_type": "type", "validated": true, "ani": 80.5424, "matched_fragments": 619, "total_fragments": 1681, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Comamonas thiooxydans", "strain": "strain=DSM 17888", "accession": "GCA_000964545.1", "taxid": 363952, "species_taxid": 363952, "relation_to_type": "type", "validated": true, "ani": 80.2315, "matched_fragments": 687, "total_fragments": 1681, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Comamonas thiooxydans", "strain": "strain=DSM 17888", "accession": "GCA_001418295.1", "taxid": 363952, "species_taxid": 363952, "relation_to_type": "type", "validated": true, "ani": 80.2244, "matched_fragments": 684, "total_fragments": 1681, 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"organism_name": "Acidovorax facilis", "strain": "strain=DSM 649", "accession": "GCA_023913775.1", "taxid": 12917, "species_taxid": 12917, "relation_to_type": "type", "validated": true, "ani": 79.2709, "matched_fragments": 605, "total_fragments": 1681, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Limnohabitans radicicola", "strain": "strain=JUR4", "accession": "GCA_014837235.1", "taxid": 2771427, "species_taxid": 2771427, "relation_to_type": "type", "validated": true, "ani": 78.8804, "matched_fragments": 379, "total_fragments": 1681, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hydrogenophaga crocea", "strain": "strain=BA0156", "accession": "GCA_011388215.1", "taxid": 2716225, "species_taxid": 2716225, "relation_to_type": "type", "validated": true, "ani": 78.5625, "matched_fragments": 494, "total_fragments": 1681, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ramlibacter pinisoli", "strain": 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