{ "type": "genome", "identifier": "GCF_021029445.1", "organism": "Pseudomonas wenzhouensis", "title": "Pseudomonas wenzhouensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Wenzhou Medical University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_021029445.1", "bioproject": "PRJNA224116", "biosample": "SAMN18559493", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2906062", "species_taxid": "2906062", "organism_name": "Pseudomonas wenzhouensis", "infraspecific_name": "strain=A20", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/12/03", "asm_name": "ASM2102944v1", "asm_submitter": "Wenzhou Medical University", "gbrs_paired_asm": "GCA_021029445.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/021/029/445/GCF_021029445.1_ASM2102944v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4452100", "genome_size_ungapped": "4452100", "gc_percent": "62.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_021029445.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "4157", "protein_coding_gene_count": "3988", "non_coding_gene_count": "81", "pubmed_id": "34975778" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-12-03", "dateModified": "2021-12-03", "datePublished": "2021-12-03", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudomonas wenzhouensis" ], "sample_taxid": [ "2906062" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Zhejiang" ], "sample_host_location_id": [], "data_size": "1.233 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4452100", "Number of Sequences": "1", "Longest Sequences (bp)": "4452100", "N50 (bp)": "4452100", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "62.2", "Number of CDSs": "4117", "Average Protein Length": "319.5", "Coding Ratio (%)": "88.6", "Number of rRNAs": "12", "Number of tRNAs": "65", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudomonas oleovorans subsp. oleovorans", "strain": "strain=NBRC 13583", "accession": "GCA_002091815.1", "taxid": 1218129, "species_taxid": 301, "relation_to_type": "type", "validated": true, "ani": 91.2166, "matched_fragments": 1121, 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{ "organism_name": "Pseudomonas toyotomiensis", "strain": "strain=JCM 15604", "accession": "GCA_900115695.1", "taxid": 554344, "species_taxid": 554344, "relation_to_type": "type", "validated": true, "ani": 89.4738, "matched_fragments": 1173, "total_fragments": 1484, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas toyotomiensis", "strain": "strain=DSM 26169", "accession": "GCA_002741095.1", "taxid": 554344, "species_taxid": 554344, "relation_to_type": "type", "validated": true, "ani": 89.4549, "matched_fragments": 1183, "total_fragments": 1484, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas guguanensis", "strain": "strain=JCM 18416", "accession": "GCA_900104265.1", "taxid": 1198456, "species_taxid": 1198456, "relation_to_type": "type", "validated": true, "ani": 89.1565, "matched_fragments": 1156, "total_fragments": 1484, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas 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"species_taxid": 2493633, "relation_to_type": "type", "validated": true, "ani": 88.1923, "matched_fragments": 1162, "total_fragments": 1484, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas lalucatii", "strain": "strain=R1b54", "accession": "GCA_018398425.1", "taxid": 1424203, "species_taxid": 1424203, "relation_to_type": "type", "validated": true, "ani": 83.507, "matched_fragments": 898, "total_fragments": 1484, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas insulae", "strain": "strain=UL073", "accession": "GCA_016901015.1", "taxid": 2809017, "species_taxid": 2809017, "relation_to_type": "type", "validated": true, "ani": 81.9927, "matched_fragments": 819, "total_fragments": 1484, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_008041835.1", "gtdb_species": "s__Pseudomonas_E 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