{ "type": "genome", "identifier": "GCF_021043325.1", "organism": "Ideonella azotifigens", "title": "Ideonella azotifigens", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Gothenburg - CCUG", "publication": [ {} ], "properties": { "assembly_accession": "GCF_021043325.1", "bioproject": "PRJNA224116", "biosample": "SAMN23423859", "wgs_master": "JAJNKD000000000.1", "refseq_category": "reference genome", "taxid": "513160", "species_taxid": "513160", "organism_name": "Ideonella azotifigens", "infraspecific_name": "strain=CCUG 75669T", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/12/04", "asm_name": "ASM2104332v1", "asm_submitter": "University of Gothenburg - CCUG", "gbrs_paired_asm": "GCA_021043325.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/021/043/325/GCF_021043325.1_ASM2104332v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7290851", "genome_size_ungapped": "7290851", "gc_percent": "67.500000", "replicon_count": "0", "scaffold_count": "59", "contig_count": "59", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_021043325.1-RS_2024_09_19", "annotation_date": "2024-09-19", "total_gene_count": "6500", "protein_coding_gene_count": "6368", "non_coding_gene_count": "58", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-12-04", "dateModified": "2021-12-04", "datePublished": "2021-12-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Ideonella azotifigens" ], "sample_taxid": [ "513160" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: NY, Ithaca" ], "sample_host_location_id": [], "data_size": "1.978 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7290851", "Number of Sequences": "59", "Longest Sequences (bp)": "1027041", "N50 (bp)": "308708", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "67.6", "Number of CDSs": "6413", "Average Protein Length": "342.9", "Coding Ratio (%)": "90.5", "Number of rRNAs": "3", "Number of tRNAs": "64", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Ideonella azotifigens", "strain": "strain=DSM 21438", "accession": "GCA_006519715.1", "taxid": 513160, "species_taxid": 513160, "relation_to_type": "type", "validated": true, "ani": 99.4848, "matched_fragments": 1424, 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"below_threshold" }, { "organism_name": "Rubrivivax benzoatilyticus", "strain": "strain=JA2", "accession": "GCA_000190375.2", "taxid": 316997, "species_taxid": 316997, "relation_to_type": "type", "validated": true, "ani": 80.1663, "matched_fragments": 721, "total_fragments": 2398, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphaerotilus sulfidivorans", "strain": "strain=D-501", "accession": "GCA_013426975.1", "taxid": 639200, "species_taxid": 639200, "relation_to_type": "type", "validated": true, "ani": 80.1031, "matched_fragments": 740, "total_fragments": 2398, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Schlegelella thermodepolymerans", "strain": "strain=DSM 15344", "accession": "GCA_015476235.1", "taxid": 215580, "species_taxid": 215580, "relation_to_type": "type", "validated": true, "ani": 80.0819, "matched_fragments": 717, "total_fragments": 2398, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rubrivivax benzoatilyticus", "strain": "strain=JA2", "accession": "GCA_000420125.1", "taxid": 316997, "species_taxid": 316997, "relation_to_type": "type", "validated": true, "ani": 80.0509, "matched_fragments": 746, "total_fragments": 2398, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphaerotilus montanus", "strain": "strain=HS", "accession": "GCA_013426955.1", "taxid": 522889, "species_taxid": 522889, "relation_to_type": "type", "validated": true, "ani": 79.9878, "matched_fragments": 731, "total_fragments": 2398, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ideonella livida", "strain": "strain=TBM-1", "accession": "GCA_010499455.1", "taxid": 2707176, "species_taxid": 2707176, "relation_to_type": "type", "validated": true, "ani": 79.9708, "matched_fragments": 817, "total_fragments": 2398, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphaerotilus montanus", "strain": "strain=DSM 21226", "accession": 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