{ "type": "genome", "identifier": "GCF_021049305.1", "organism": "Ideonella dechloratans", "title": "Ideonella dechloratans", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Gothenburg - CCUG", "publication": [ {} ], "properties": { "assembly_accession": "GCF_021049305.1", "bioproject": "PRJNA224116", "biosample": "SAMN23421340", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "36863", "species_taxid": "36863", "organism_name": "Ideonella dechloratans", "infraspecific_name": "strain=CCUG 30977", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/12/06", "asm_name": "ASM2104930v1", "asm_submitter": "University of Gothenburg - CCUG", "gbrs_paired_asm": "GCA_021049305.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/021/049/305/GCF_021049305.1_ASM2104930v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4544016", "genome_size_ungapped": "4544016", "gc_percent": "69.000000", "replicon_count": "2", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_021049305.1-RS_2024_09_19", "annotation_date": "2024-09-19", "total_gene_count": "4266", "protein_coding_gene_count": "4151", "non_coding_gene_count": "73", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-12-06", "dateModified": "2021-12-06", "datePublished": "2021-12-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Ideonella dechloratans" ], "sample_taxid": [ "36863" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Sweden: Malmo, Sjolunda municipal treatment plant" ], "sample_host_location_id": [], "data_size": "1.217 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4544016", "Number of Sequences": "2", "Longest Sequences (bp)": "3835118", "N50 (bp)": "3835118", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "69.2", "Number of CDSs": "4207", "Average Protein Length": "332.6", "Coding Ratio (%)": "92.4", "Number of rRNAs": "9", "Number of tRNAs": "67", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Ideonella dechloratans", "strain": "strain=CCUG 30977", "accession": "GCA_021049305.1", "taxid": 36863, "species_taxid": 36863, "relation_to_type": "type", "validated": true, "ani": 100.0, 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95, "status": "below_threshold" }, { "organism_name": "Ideonella livida", "strain": "strain=TBM-1", "accession": "GCA_010499455.1", "taxid": 2707176, "species_taxid": 2707176, "relation_to_type": "type", "validated": true, "ani": 81.3628, "matched_fragments": 752, "total_fragments": 1514, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphaerotilus hippei", "strain": "strain=DSM 566", "accession": "GCA_003201595.1", "taxid": 744406, "species_taxid": 744406, "relation_to_type": "type", "validated": true, "ani": 80.9289, "matched_fragments": 681, "total_fragments": 1514, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Schlegelella thermodepolymerans", "strain": "strain=DSM 15344", "accession": "GCA_015476235.1", "taxid": 215580, "species_taxid": 215580, "relation_to_type": "type", "validated": true, "ani": 80.8783, "matched_fragments": 612, "total_fragments": 1514, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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"num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.125, "cell_length": 0.602, "doubling_h": null, "growth_tmp": 34.0, "optimum_tmp": null, "optimum_ph": 6.5, "genome_size": 3431608.0, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": 0.0, "sporulation": null, "motility": 1.0, "range_salinity": null, "facultative_respiration": 1.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 0.0, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Ideonella", "dechloratans" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }