{
    "type": "genome",
    "identifier": "GCF_021117385.1",
    "organism": "Frateuria soli",
    "title": "Frateuria soli",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "National Institute of Agricultural Sciences",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_021117385.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN23482247",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "1542730",
        "species_taxid": "1542730",
        "organism_name": "Frateuria soli",
        "infraspecific_name": "strain=5GH9-11",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/12/08",
        "asm_name": "ASM2111738v1",
        "asm_submitter": "National Institute of Agricultural Sciences",
        "gbrs_paired_asm": "GCA_021117385.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/021/117/385/GCF_021117385.1_ASM2111738v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3488520",
        "genome_size_ungapped": "3488520",
        "gc_percent": "68.500000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_021117385.1-RS_2024_03_28",
        "annotation_date": "2024-03-28",
        "total_gene_count": "3192",
        "protein_coding_gene_count": "3114",
        "non_coding_gene_count": "59",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-12-08",
    "dateModified": "2021-12-08",
    "datePublished": "2021-12-08",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Frateuria soli"
        ],
        "sample_taxid": [
            "1542730"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "South Korea: Jeollabuk-do, Wanju_Gun, Bibong-myeon"
        ],
        "sample_host_location_id": [],
        "data_size": "0.944 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3488520",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "3488520",
        "N50 (bp)": "3488520",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "68.7",
        "Number of CDSs": "3183",
        "Average Protein Length": "325.0",
        "Coding Ratio (%)": "88.9",
        "Number of rRNAs": "6",
        "Number of tRNAs": "55",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Frateuria flava",
                "strain": "strain=MAH-13",
                "accession": "GCA_017837635.1",
                "taxid": 2821489,
                "species_taxid": 2821489,
                "relation_to_type": "type",
                "validated": true,
                "ani": 89.3288,
                "matched_fragments": 1000,
                "total_fragments": 1162,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Frateuria terrea",
                "strain": "strain=DSM 26515",
                "accession": "GCA_900109025.1",
                "taxid": 529704,
                "species_taxid": 529704,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.2782,
                "matched_fragments": 934,
                "total_fragments": 1162,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Frateuria terrea",
                "strain": "strain=CGMCC 1.7053",
                "accession": "GCA_900115705.1",
                "taxid": 529704,
                "species_taxid": 529704,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.2196,
                "matched_fragments": 943,
                "total_fragments": 1162,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Fulvimonas soli",
                "strain": "strain=DSM 14263",
                "accession": "GCA_003148905.1",
                "taxid": 155197,
                "species_taxid": 155197,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.4389,
                "matched_fragments": 782,
                "total_fragments": 1162,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Fulvimonas soli",
                "strain": "strain=LMG 19981",
                "accession": "GCA_006352285.1",
                "taxid": 155197,
                "species_taxid": 155197,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.3675,
                "matched_fragments": 723,
                "total_fragments": 1162,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhodanobacter thiooxydans",
                "strain": "strain=LCS2",
                "accession": "GCA_000264375.1",
                "taxid": 416169,
                "species_taxid": 416169,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.8884,
                "matched_fragments": 717,
                "total_fragments": 1162,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Dyella kyungheensis",
                "strain": "strain=THG-B117",
                "accession": "GCA_016905005.1",
                "taxid": 1242174,
                "species_taxid": 1242174,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.0734,
                "matched_fragments": 664,
                "total_fragments": 1162,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Dyella telluris",
                "strain": "strain=G9",
                "accession": "GCA_014297575.1",
                "taxid": 2763498,
                "species_taxid": 2763498,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.0061,
                "matched_fragments": 647,
                "total_fragments": 1162,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Dyella japonica",
                "strain": "strain=DSM 16301",
                "accession": "GCA_001010355.1",
                "taxid": 231455,
                "species_taxid": 231455,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.0037,
                "matched_fragments": 538,
                "total_fragments": 1162,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Dyella acidiphila",
                "strain": "strain=7MK23",
                "accession": "GCA_014863405.1",
                "taxid": 2775866,
                "species_taxid": 2775866,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.5159,
                "matched_fragments": 592,
                "total_fragments": 1162,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Tahibacter caeni",
                "strain": "strain=BUT-6",
                "accession": "GCA_024609805.1",
                "taxid": 1453545,
                "species_taxid": 1453545,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.6533,
                "matched_fragments": 410,
                "total_fragments": 1162,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_017837635.1",
                "gtdb_species": "s__Frateuria_A sp017837635",
                "ani": 89.3237,
                "matched_fragments": 1000,
                "total_fragments": 1162,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Rhodanobacteraceae;g__Frateuria_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900115705.1",
                "gtdb_species": "s__Frateuria_A terrea",
                "ani": 87.225,
                "matched_fragments": 943,
                "total_fragments": 1162,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Rhodanobacteraceae;g__Frateuria_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_013362045.1",
                "gtdb_species": "s__Frateuria_A sp013362045",
                "ani": 86.9822,
                "matched_fragments": 709,
                "total_fragments": 1162,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Rhodanobacteraceae;g__Frateuria_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003148905.1",
                "gtdb_species": "s__Fulvimonas soli",
                "ani": 84.4735,
                "matched_fragments": 779,
                "total_fragments": 1162,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Rhodanobacteraceae;g__Fulvimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.99",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_001428405.1",
                "gtdb_species": "s__Frateuria_A sp001428405",
                "ani": 84.1876,
                "matched_fragments": 794,
                "total_fragments": 1162,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Rhodanobacteraceae;g__Frateuria_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001182895.1",
                "gtdb_species": "s__Frateuria_B defendens",
                "ani": 83.4915,
                "matched_fragments": 695,
                "total_fragments": 1162,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Rhodanobacteraceae;g__Frateuria_B",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017848855.1",
                "gtdb_species": "s__Rhodanobacter denitrificans_B",
                "ani": 83.0506,
                "matched_fragments": 693,
                "total_fragments": 1162,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Rhodanobacteraceae;g__Rhodanobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900112865.1",
                "gtdb_species": "s__Dyella marensis",
                "ani": 82.7822,
                "matched_fragments": 735,
                "total_fragments": 1162,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Rhodanobacteraceae;g__Dyella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.99",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000334915.1",
                "gtdb_species": "s__Dyella_A ginsengisoli",
                "ani": 82.7606,
                "matched_fragments": 737,
                "total_fragments": 1162,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Rhodanobacteraceae;g__Dyella_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_018970895.1",
                "gtdb_species": "s__Dyella_A sp018970895",
                "ani": 82.7223,
                "matched_fragments": 650,
                "total_fragments": 1162,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Rhodanobacteraceae;g__Dyella_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_012275375.1",
                "gtdb_species": "s__Dyella sp012275375",
                "ani": 82.7026,
                "matched_fragments": 723,
                "total_fragments": 1162,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Rhodanobacteraceae;g__Dyella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.64",
                "min_intra_species_ani": "95.58",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_003332825.1",
                "gtdb_species": "s__Dyella sp003332825",
                "ani": 81.8124,
                "matched_fragments": 672,
                "total_fragments": 1162,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Rhodanobacteraceae;g__Dyella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.398,
        "cell_length": 0.439,
        "doubling_h": null,
        "growth_tmp": 27.25,
        "optimum_tmp": 31.5,
        "optimum_ph": 7.25,
        "genome_size": 3721475.5,
        "gc_content": 63.4,
        "coding_genes": 3112.0,
        "rRNA16S_genes": 4.0,
        "tRNA_genes": 74.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Frateuria",
        "soli"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}