{
    "type": "genome",
    "identifier": "GCF_021129235.1",
    "organism": "Kineosporia mesophila",
    "title": "Kineosporia mesophila",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Chulalongkorn University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_021129235.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN23440781",
        "wgs_master": "JAJOMA000000000.1",
        "refseq_category": "reference genome",
        "taxid": "566012",
        "species_taxid": "566012",
        "organism_name": "Kineosporia mesophila",
        "infraspecific_name": "strain=JCM 16902",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/12/08",
        "asm_name": "ASM2112923v1",
        "asm_submitter": "Chulalongkorn University",
        "gbrs_paired_asm": "GCA_021129235.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/021/129/235/GCF_021129235.1_ASM2112923v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "7783199",
        "genome_size_ungapped": "7783199",
        "gc_percent": "69.500000",
        "replicon_count": "0",
        "scaffold_count": "61",
        "contig_count": "61",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_021129235.1-RS_2024_12_11",
        "annotation_date": "2024-12-11",
        "total_gene_count": "7015",
        "protein_coding_gene_count": "6848",
        "non_coding_gene_count": "65",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-12-08",
    "dateModified": "2021-12-08",
    "datePublished": "2021-12-08",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Kineosporia mesophila"
        ],
        "sample_taxid": [
            "566012"
        ],
        "sample_host_organism": [
            "Tripterygium wilfordii"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "-"
        ],
        "sample_host_location_id": [],
        "data_size": "2.111 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 4.17,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "7783199",
        "Number of Sequences": "61",
        "Longest Sequences (bp)": "828902",
        "N50 (bp)": "259064",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "69.4",
        "Number of CDSs": "7027",
        "Average Protein Length": "327.5",
        "Coding Ratio (%)": "88.7",
        "Number of rRNAs": "1",
        "Number of tRNAs": "70",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Kineosporia mesophila",
                "strain": "strain=JCM 16902",
                "accession": "GCA_021129235.1",
                "taxid": 566012,
                "species_taxid": 566012,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 2561,
                "total_fragments": 2564,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Kineosporia corallincola",
                "strain": "strain=J2-2",
                "accession": "GCA_018499875.1",
                "taxid": 2835133,
                "species_taxid": 2835133,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.131,
                "matched_fragments": 1667,
                "total_fragments": 2564,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Kineosporia rhizophila",
                "strain": "strain=JCM 9960",
                "accession": "GCA_021277265.1",
                "taxid": 84633,
                "species_taxid": 84633,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.3255,
                "matched_fragments": 1546,
                "total_fragments": 2564,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Kineococcus indalonis",
                "strain": "strain=T90",
                "accession": "GCA_009906395.1",
                "taxid": 2696566,
                "species_taxid": 2696566,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.1661,
                "matched_fragments": 368,
                "total_fragments": 2564,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cellulomonas palmilytica",
                "strain": "strain=EW123",
                "accession": "GCA_021590045.1",
                "taxid": 2608402,
                "species_taxid": 2608402,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9907,
                "matched_fragments": 334,
                "total_fragments": 2564,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Janibacter melonis",
                "strain": "strain=NBRC107855",
                "accession": "GCA_020567375.1",
                "taxid": 262209,
                "species_taxid": 262209,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.902,
                "matched_fragments": 326,
                "total_fragments": 2564,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Kineococcus rubinsiae",
                "strain": "strain=B12",
                "accession": "GCA_011839805.1",
                "taxid": 2609562,
                "species_taxid": 2609562,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.8512,
                "matched_fragments": 471,
                "total_fragments": 2564,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cellulomonas avistercoris",
                "strain": "strain=Sa3CUA2",
                "accession": "GCA_014836445.1",
                "taxid": 2762242,
                "species_taxid": 2762242,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.7352,
                "matched_fragments": 349,
                "total_fragments": 2564,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Kineococcus radiotolerans",
                "strain": "strain=SRS30216",
                "accession": "GCA_000017305.1",
                "taxid": 131568,
                "species_taxid": 131568,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.7054,
                "matched_fragments": 493,
                "total_fragments": 2564,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cellulomonas hominis",
                "strain": "strain=DSM 9581",
                "accession": "GCA_014201095.1",
                "taxid": 156981,
                "species_taxid": 156981,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 76.661,
                "matched_fragments": 451,
                "total_fragments": 2564,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cellulomonas hominis",
                "strain": "strain=NBRC 16055",
                "accession": "GCA_007989225.1",
                "taxid": 156981,
                "species_taxid": 156981,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 76.6304,
                "matched_fragments": 439,
                "total_fragments": 2564,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Georgenia muralis",
                "strain": "strain=DSM 14418",
                "accession": "GCA_003814705.1",
                "taxid": 154117,
                "species_taxid": 154117,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.6094,
                "matched_fragments": 335,
                "total_fragments": 2564,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cellulosimicrobium funkei",
                "strain": "strain=NBRC 104118",
                "accession": "GCA_001570825.1",
                "taxid": 264251,
                "species_taxid": 264251,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 76.5836,
                "matched_fragments": 356,
                "total_fragments": 2564,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sporichthya polymorpha",
                "strain": "strain=DSM 43042",
                "accession": "GCA_000384115.1",
                "taxid": 35751,
                "species_taxid": 35751,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.4582,
                "matched_fragments": 400,
                "total_fragments": 2564,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces spongiicola",
                "strain": "strain=HNM0071",
                "accession": "GCA_003122365.1",
                "taxid": 1690221,
                "species_taxid": 1690221,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.3361,
                "matched_fragments": 395,
                "total_fragments": 2564,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Jiangella muralis",
                "strain": "strain=DSM 45357",
                "accession": "GCA_001270745.1",
                "taxid": 702383,
                "species_taxid": 702383,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.2927,
                "matched_fragments": 539,
                "total_fragments": 2564,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thermopolyspora flexuosa",
                "strain": "strain=JCM 3056",
                "accession": "GCA_014647775.1",
                "taxid": 103836,
                "species_taxid": 103836,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.2591,
                "matched_fragments": 440,
                "total_fragments": 2564,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 4.17,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_018499875.1",
                "gtdb_species": "s__Kineosporia sp018499875",
                "ani": 84.1184,
                "matched_fragments": 1668,
                "total_fragments": 2564,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Kineosporiaceae;g__Kineosporia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_000719025.1",
                "gtdb_species": "s__Kineosporia aurantiaca",
                "ani": 83.0357,
                "matched_fragments": 1563,
                "total_fragments": 2564,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Kineosporiaceae;g__Kineosporia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_006716205.1",
                "gtdb_species": "s__Oryzihumus leptocrescens",
                "ani": 77.5731,
                "matched_fragments": 427,
                "total_fragments": 2564,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Dermatophilaceae;g__Oryzihumus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002198675.1",
                "gtdb_species": "s__R-H-3 sp002198675",
                "ani": 77.3721,
                "matched_fragments": 611,
                "total_fragments": 2564,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Kineosporiaceae;g__R-H-3",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016794595.1",
                "gtdb_species": "s__JADJPO01 sp016794595",
                "ani": 77.2733,
                "matched_fragments": 474,
                "total_fragments": 2564,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Kineosporiaceae;g__JADJPO01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016213575.1",
                "gtdb_species": "s__R-H-3 sp016213575",
                "ani": 77.2643,
                "matched_fragments": 489,
                "total_fragments": 2564,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Kineosporiaceae;g__R-H-3",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002198655.1",
                "gtdb_species": "s__R-H-3 sp002198655",
                "ani": 77.2518,
                "matched_fragments": 594,
                "total_fragments": 2564,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Kineosporiaceae;g__R-H-3",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900111375.1",
                "gtdb_species": "s__Pedococcus cremeus",
                "ani": 77.2231,
                "matched_fragments": 424,
                "total_fragments": 2564,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Dermatophilaceae;g__Pedococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.41",
                "min_intra_species_ani": "95.41",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_003721155.3",
                "gtdb_species": "s__Marihabitans melonis",
                "ani": 77.1276,
                "matched_fragments": 312,
                "total_fragments": 2564,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Dermatophilaceae;g__Marihabitans",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.04",
                "min_intra_species_ani": "97.16",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 16,
                "status": "-"
            },
            {
                "accession": "GCA_014360395.1",
                "gtdb_species": "s__Actinotalea sp014360395",
                "ani": 77.0873,
                "matched_fragments": 215,
                "total_fragments": 2564,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Actinotalea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_012719445.1",
                "gtdb_species": "s__JAAYAH01 sp012719445",
                "ani": 76.8916,
                "matched_fragments": 406,
                "total_fragments": 2564,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Kineosporiaceae;g__JAAYAH01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000426185.1",
                "gtdb_species": "s__Cellulomonas sp000426185",
                "ani": 76.8724,
                "matched_fragments": 328,
                "total_fragments": 2564,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Cellulomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_011839805.1",
                "gtdb_species": "s__Kineococcus rubinsiae",
                "ani": 76.848,
                "matched_fragments": 471,
                "total_fragments": 2564,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Kineococcaceae;g__Kineococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000017305.1",
                "gtdb_species": "s__Kineococcus radiotolerans",
                "ani": 76.7037,
                "matched_fragments": 492,
                "total_fragments": 2564,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Kineococcaceae;g__Kineococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.46",
                "min_intra_species_ani": "98.46",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_001270745.1",
                "gtdb_species": "s__Jiangella muralis",
                "ani": 76.2883,
                "matched_fragments": 542,
                "total_fragments": 2564,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Jiangellales;f__Jiangellaceae;g__Jiangella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_006716785.1",
                "gtdb_species": "s__Thermopolyspora flexuosa",
                "ani": 76.2547,
                "matched_fragments": 447,
                "total_fragments": 2564,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Thermopolyspora",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.99",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000518265.1",
                "gtdb_species": "s__Spirillospora oligospora",
                "ani": 76.2394,
                "matched_fragments": 513,
                "total_fragments": 2564,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Spirillospora",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_000715825.1",
                "gtdb_species": "s__Goodfellowiella coeruleoviolacea",
                "ani": 76.1086,
                "matched_fragments": 562,
                "total_fragments": 2564,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Pseudonocardiaceae;g__Goodfellowiella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": 0.0,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": 28.0,
        "optimum_tmp": 19.0,
        "optimum_ph": null,
        "genome_size": 4039897.3,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 1.0,
        "sporulation": 1.0,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 1.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Kineosporia",
        "mesophila"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}