{ "type": "genome", "identifier": "GCF_021147825.1", "organism": "Pseudomonas quasicaspiana", "title": "Pseudomonas quasicaspiana", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Florida", "publication": [ {} ], "properties": { "assembly_accession": "GCF_021147825.1", "bioproject": "PRJNA224116", "biosample": "SAMN18822566", "wgs_master": "JAGTPI000000000.1", "refseq_category": "reference genome", "taxid": "2829821", "species_taxid": "2829821", "organism_name": "Pseudomonas quasicaspiana", "infraspecific_name": "strain=CDFA553", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/12/09", "asm_name": "ASM2114782v1", "asm_submitter": "University of Florida", "gbrs_paired_asm": "GCA_021147825.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/021/147/825/GCF_021147825.1_ASM2114782v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6508284", "genome_size_ungapped": "6508284", "gc_percent": "57.000000", "replicon_count": "0", "scaffold_count": "138", "contig_count": "138", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_021147825.1-RS_2024_11_26", "annotation_date": "2024-11-26", "total_gene_count": "5921", "protein_coding_gene_count": "5727", "non_coding_gene_count": "66", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-12-09", "dateModified": "2021-12-09", "datePublished": "2021-12-09", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudomonas quasicaspiana" ], "sample_taxid": [ "2829821" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], 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"below_threshold" }, { "organism_name": "Pseudomonas avellanae", "strain": "strain=BPIC 631", "accession": "GCA_000302915.1", "taxid": 46257, "species_taxid": 46257, "relation_to_type": "type", "validated": true, "ani": 81.2994, "matched_fragments": 1020, "total_fragments": 2102, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas syringae pv. coryli", "strain": "strain=NCPPB 4273", "accession": "GCA_000972175.1", "taxid": 317659, "species_taxid": 317659, "relation_to_type": "pathovar", "validated": true, "ani": 81.2839, "matched_fragments": 989, "total_fragments": 2102, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas syringae pv. coryli", "strain": "strain=ICMP17001", "accession": "GCA_001400235.1", "taxid": 317659, "species_taxid": 317659, "relation_to_type": "pathovar", "validated": true, "ani": 81.2746, "matched_fragments": 785, "total_fragments": 2102, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas syringae group genomosp. 3", "strain": "strain=DC3000", "accession": "GCA_000007805.1", "taxid": 251701, "species_taxid": 251701, "relation_to_type": "type", "validated": true, "ani": 81.2703, "matched_fragments": 1022, "total_fragments": 2102, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas syringae group genomosp. 3", "strain": "strain=ICMP2814", "accession": "GCA_001401385.1", "taxid": 251701, "species_taxid": 251701, "relation_to_type": "pathovar", "validated": true, "ani": 81.27, "matched_fragments": 985, "total_fragments": 2102, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas syringae group genomosp. 3", "strain": "strain=ICMP4116", "accession": "GCA_001401405.1", "taxid": 251701, "species_taxid": 251701, "relation_to_type": "pathovar", "validated": true, "ani": 81.2647, "matched_fragments": 1008, "total_fragments": 2102, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas syringae group genomosp. 3", "strain": "strain=ICMP8903", "accession": "GCA_001400595.1", "taxid": 251701, "species_taxid": 251701, "relation_to_type": "pathovar", "validated": true, "ani": 81.2565, "matched_fragments": 997, "total_fragments": 2102, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas syringae", "strain": "strain=ICMP3023", "accession": "GCA_001401075.1", "taxid": 317, "species_taxid": 317, "relation_to_type": "suspected-type", "validated": true, "ani": 81.2341, "matched_fragments": 983, "total_fragments": 2102, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas syringae", "strain": "strain=KCTC 12500", "accession": "GCA_000507185.2", "taxid": 317, "species_taxid": 317, "relation_to_type": "suspected-type", "validated": true, "ani": 81.2285, "matched_fragments": 978, "total_fragments": 2102, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas abietaniphila", "strain": "strain=ATCC 700689", "accession": "GCA_900100795.1", "taxid": 89065, "species_taxid": 89065, "relation_to_type": "type", "validated": true, "ani": 80.928, "matched_fragments": 988, "total_fragments": 2102, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas farris", "strain": "strain=SWRI79", "accession": "GCA_019145235.1", "taxid": 2841207, "species_taxid": 2841207, "relation_to_type": "type", "validated": true, "ani": 80.8109, "matched_fragments": 878, "total_fragments": 2102, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas pharyngis", "strain": "strain=BML-PP036", "accession": "GCA_021602345.1", "taxid": 2892333, "species_taxid": 2892333, "relation_to_type": "type", "validated": true, "ani": 80.8108, "matched_fragments": 879, "total_fragments": 2102, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas sputi", "strain": "strain=BML-PP014", "accession": "GCA_021603585.1", "taxid": 2892325, "species_taxid": 2892325, "relation_to_type": "type", "validated": true, "ani": 80.7471, "matched_fragments": 866, "total_fragments": 2102, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas germanica", "strain": "strain=FIT28", "accession": "GCA_019614655.1", "taxid": 2815720, "species_taxid": 2815720, "relation_to_type": "type", "validated": true, "ani": 80.7227, "matched_fragments": 861, "total_fragments": 2102, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas izuensis", "strain": "strain=IzPS43_3003", "accession": "GCA_009861505.1", "taxid": 2684212, "species_taxid": 2684212, "relation_to_type": "type", "validated": true, "ani": 80.6613, "matched_fragments": 774, "total_fragments": 2102, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas yamanorum", "strain": "strain=LMG 27247", "accession": "GCA_900105735.1", "taxid": 515393, "species_taxid": 515393, "relation_to_type": "suspected-type", "validated": true, "ani": 80.6043, "matched_fragments": 870, "total_fragments": 2102, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas spelaei", "strain": "strain=CCM 7893", "accession": "GCA_009724245.1", "taxid": 1055469, "species_taxid": 1055469, "relation_to_type": "type", "validated": true, "ani": 80.5258, "matched_fragments": 788, "total_fragments": 2102, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas brenneri", "strain": "strain=DSM 15294", "accession": "GCA_007858285.1", "taxid": 129817, "species_taxid": 129817, "relation_to_type": "type", "validated": true, "ani": 80.4772, "matched_fragments": 780, "total_fragments": 2102, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas marginalis", "strain": "strain=DSM 13124", "accession": "GCA_007858155.1", "taxid": 298, "species_taxid": 298, "relation_to_type": "suspected-type", 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