{ "type": "genome", "identifier": "GCF_021172065.1", "organism": "Pseudocitrobacter corydidari", "title": "Pseudocitrobacter corydidari", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Georg-August-University Goettingen", "publication": [ {} ], "properties": { "assembly_accession": "GCF_021172065.1", "bioproject": "PRJNA224116", "biosample": "SAMN22826608", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2891570", "species_taxid": "2891570", "organism_name": "Pseudocitrobacter corydidari", "infraspecific_name": "na", "isolate": "G163CM", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/12/13", "asm_name": "ASM2117206v1", "asm_submitter": "Georg-August-University Goettingen", "gbrs_paired_asm": "GCA_021172065.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/021/172/065/GCF_021172065.1_ASM2117206v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5015040", "genome_size_ungapped": "5015040", "gc_percent": "54.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_021172065.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "4693", "protein_coding_gene_count": "4516", "non_coding_gene_count": "123", "pubmed_id": "35997622" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-12-13", "dateModified": "2021-12-13", "datePublished": "2021-12-13", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudocitrobacter corydidari" ], "sample_taxid": [ "2891570" ], "sample_host_organism": [ "Pseudoglomeris magnifica" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not collected" ], "sample_host_location_id": [], "data_size": "1.415 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5015040", "Number of Sequences": "1", "Longest Sequences (bp)": "5015040", "N50 (bp)": "5015040", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "53.8", "Number of CDSs": "4566", "Average Protein Length": "322.4", "Coding Ratio (%)": "88.1", "Number of rRNAs": "28", "Number of tRNAs": "87", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudocitrobacter corydidari", "strain": "", "accession": "GCA_021172065.1", "taxid": 2891570, "species_taxid": 2891570, "relation_to_type": "type", "validated": true, "ani": 100.0, 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"below_threshold" }, { "organism_name": "Enterobacter bugandensis", "strain": "strain=FDAARGOS 1427", "accession": "GCA_019046905.1", "taxid": 881260, "species_taxid": 881260, "relation_to_type": "type", "validated": true, "ani": 82.2261, "matched_fragments": 936, "total_fragments": 1671, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Escherichia fergusonii", "strain": "strain=FDAARGOS_1499", "accession": "GCA_020097475.1", "taxid": 564, "species_taxid": 564, "relation_to_type": "type", "validated": true, "ani": 82.0814, "matched_fragments": 789, "total_fragments": 1671, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter cloacae", "strain": "strain=ATCC 13047", "accession": "GCA_000755525.1", "taxid": 550, "species_taxid": 550, "relation_to_type": "type", "validated": true, "ani": 82.038, "matched_fragments": 914, "total_fragments": 1671, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter 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