{ "type": "genome", "identifier": "GCF_021215455.1", "organism": "Mucilaginibacter roseus", "title": "Mucilaginibacter roseus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Lycoming College", "publication": [ {} ], "properties": { "assembly_accession": "GCF_021215455.1", "bioproject": "PRJNA224116", "biosample": "SAMN23796873", "wgs_master": "JAJPWV000000000.1", "refseq_category": "reference genome", "taxid": "1528868", "species_taxid": "1528868", "organism_name": "Mucilaginibacter roseus", "infraspecific_name": "strain=LMG 28454", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/12/14", "asm_name": "ASM2121545v1", "asm_submitter": "Lycoming College", "gbrs_paired_asm": "GCA_021215455.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/021/215/455/GCF_021215455.1_ASM2121545v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4193356", "genome_size_ungapped": "4193356", "gc_percent": "44.000000", "replicon_count": "0", "scaffold_count": "12", "contig_count": "12", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_021215455.1-RS_2024_10_25", "annotation_date": "2024-10-25", "total_gene_count": "3721", "protein_coding_gene_count": "3663", "non_coding_gene_count": "48", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-12-14", "dateModified": "2021-12-14", "datePublished": "2021-12-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Mucilaginibacter roseus" ], "sample_taxid": [ "1528868" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Taiwan: Taichung City, Caohu River" ], "sample_host_location_id": [], "data_size": "1.189 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4193356", "Number of Sequences": "12", "Longest Sequences (bp)": "1112502", "N50 (bp)": "885724", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "44.0", "Number of CDSs": "3641", "Average Protein Length": "347.2", "Coding Ratio (%)": "90.4", "Number of rRNAs": "2", "Number of tRNAs": "42", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Mucilaginibacter roseus", "strain": "strain=LMG 28454", "accession": "GCA_021215455.1", "taxid": 1528868, "species_taxid": 1528868, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1392, "total_fragments": 1392, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Mucilaginibacter limnophilus", "strain": "strain=YBJ-36", "accession": "GCA_004005815.1", "taxid": 1932778, "species_taxid": 1932778, "relation_to_type": "type", "validated": true, "ani": 78.4717, "matched_fragments": 410, "total_fragments": 1392, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter hurinus", "strain": "strain=ZR32", "accession": "GCA_003324525.1", "taxid": 2201324, "species_taxid": 2201324, "relation_to_type": "type", "validated": true, "ani": 77.8483, "matched_fragments": 289, "total_fragments": 1392, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter gossypiicola", "strain": "strain=Gh-48", "accession": "GCA_900110105.1", "taxid": 551995, "species_taxid": 551995, "relation_to_type": "type", "validated": true, "ani": 77.7169, "matched_fragments": 283, "total_fragments": 1392, "ani_threshold": 95, "status": "below_threshold" }, { 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"Mucilaginibacter agri", "strain": "strain=R11", "accession": "GCA_009928685.1", "taxid": 2695265, "species_taxid": 2695265, "relation_to_type": "type", "validated": true, "ani": 77.5055, "matched_fragments": 204, "total_fragments": 1392, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter gossypii", "strain": "strain=Gh-67", "accession": "GCA_900100945.1", "taxid": 551996, "species_taxid": 551996, "relation_to_type": "type", "validated": true, "ani": 77.4228, "matched_fragments": 291, "total_fragments": 1392, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter phyllosphaerae", "strain": "strain=CCM 8625", "accession": "GCA_014635525.1", "taxid": 1812349, "species_taxid": 1812349, "relation_to_type": "type", "validated": true, "ani": 77.4025, "matched_fragments": 282, "total_fragments": 1392, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter terrigena", "strain": "strain=17JY9-4", "accession": "GCA_004168255.1", "taxid": 2492395, "species_taxid": 2492395, "relation_to_type": "type", "validated": true, "ani": 77.3952, "matched_fragments": 269, "total_fragments": 1392, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter phyllosphaerae", "strain": "strain=PP-F2FG21", "accession": "GCA_004378255.1", "taxid": 1812349, "species_taxid": 1812349, "relation_to_type": "type", "validated": true, "ani": 77.3785, "matched_fragments": 286, "total_fragments": 1392, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter segetis", "strain": "strain=SD-g", "accession": "GCA_016522075.1", "taxid": 2793071, "species_taxid": 2793071, "relation_to_type": "type", "validated": true, "ani": 77.3752, "matched_fragments": 197, "total_fragments": 1392, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter phyllosphaerae", "strain": "strain=DSM 100995", "accession": "GCA_014196695.1", "taxid": 1812349, "species_taxid": 1812349, "relation_to_type": "type", "validated": true, "ani": 77.3713, "matched_fragments": 290, "total_fragments": 1392, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter psychrotolerans", "strain": "strain=NH7-4", "accession": "GCA_004519315.1", "taxid": 1524096, "species_taxid": 1524096, "relation_to_type": "type", "validated": true, "ani": 77.2762, "matched_fragments": 221, "total_fragments": 1392, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter lappiensis", "strain": "strain=ATCC BAA-1855", "accession": "GCA_900155965.1", "taxid": 354630, "species_taxid": 354630, "relation_to_type": "type", "validated": true, "ani": 77.1259, "matched_fragments": 278, "total_fragments": 1392, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter paludis", "strain": "strain=DSM 18603", "accession": "GCA_000166195.3", "taxid": 423351, "species_taxid": 423351, "relation_to_type": "type", "validated": true, "ani": 76.8995, "matched_fragments": 218, "total_fragments": 1392, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter aquae", "strain": "strain=CJ43", "accession": "GCA_008195825.1", "taxid": 2605747, "species_taxid": 2605747, "relation_to_type": "type", "validated": true, "ani": 76.3745, "matched_fragments": 50, "total_fragments": 1392, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_015223065.1", "gtdb_species": "s__Mucilaginibacter sp015223065", "ani": 83.2252, "matched_fragments": 936, "total_fragments": 1392, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Mucilaginibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004005815.1", "gtdb_species": "s__Mucilaginibacter limnophilus", "ani": 78.4813, "matched_fragments": 409, "total_fragments": 1392, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Mucilaginibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_007846095.1", "gtdb_species": "s__Mucilaginibacter sp007846095", "ani": 77.9081, "matched_fragments": 234, "total_fragments": 1392, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Mucilaginibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003324525.1", "gtdb_species": "s__Mucilaginibacter hurinus", "ani": 77.8599, "matched_fragments": 288, "total_fragments": 1392, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Mucilaginibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900110105.1", "gtdb_species": "s__Mucilaginibacter gossypiicola", "ani": 77.6946, "matched_fragments": 285, "total_fragments": 1392, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Mucilaginibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_007846085.1", "gtdb_species": "s__Mucilaginibacter sp007846085", "ani": 77.6436, "matched_fragments": 257, "total_fragments": 1392, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Mucilaginibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014773275.1", "gtdb_species": "s__Mucilaginibacter rigui", "ani": 77.6242, "matched_fragments": 300, "total_fragments": 1392, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Mucilaginibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003208075.1", "gtdb_species": "s__Mucilaginibacter sp003208075", "ani": 77.6133, "matched_fragments": 275, "total_fragments": 1392, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Mucilaginibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_015221995.1", "gtdb_species": "s__Mucilaginibacter boryungensis", "ani": 77.612, "matched_fragments": 211, "total_fragments": 1392, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Mucilaginibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002288635.1", "gtdb_species": "s__Mucilaginibacter sp002288635", "ani": 77.6097, "matched_fragments": 263, "total_fragments": 1392, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Mucilaginibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_013149275.1", "gtdb_species": "s__Mucilaginibacter sp013149275", "ani": 77.6015, "matched_fragments": 270, "total_fragments": 1392, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Mucilaginibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003432115.1", "gtdb_species": "s__Mucilaginibacter sp003432115", "ani": 77.5787, "matched_fragments": 322, "total_fragments": 1392, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Mucilaginibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004054195.1", "gtdb_species": "s__Mucilaginibacter sp004054195", "ani": 77.5372, "matched_fragments": 248, "total_fragments": 1392, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Mucilaginibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", 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"N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004378255.1", "gtdb_species": "s__Mucilaginibacter phyllosphaerae", "ani": 77.3657, "matched_fragments": 288, "total_fragments": 1392, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Mucilaginibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_013288465.1", "gtdb_species": "s__Mucilaginibacter sp013288465", "ani": 77.3624, "matched_fragments": 101, "total_fragments": 1392, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Mucilaginibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", 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