{ "type": "genome", "identifier": "GCF_021216675.1", "organism": "Streptomyces gobiensis", "title": "Streptomyces gobiensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Chinese Academy of Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_021216675.1", "bioproject": "PRJNA224116", "biosample": "SAMN21379562", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2875706", "species_taxid": "2875706", "organism_name": "Streptomyces gobiensis", "infraspecific_name": "strain=1_25", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/12/16", "asm_name": "ASM2121667v1", "asm_submitter": "Chinese Academy of Sciences", "gbrs_paired_asm": "GCA_021216675.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/021/216/675/GCF_021216675.1_ASM2121667v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5691859", "genome_size_ungapped": "5691859", "gc_percent": "69.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_021216675.1-RS_2024_04_05", "annotation_date": "2024-04-05", "total_gene_count": "5308", "protein_coding_gene_count": "5098", "non_coding_gene_count": "80", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-12-16", "dateModified": "2021-12-16", "datePublished": "2021-12-16", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptomyces gobiensis" ], "sample_taxid": [ "2875706" ], "sample_host_organism": [ "black gobi" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:GANSU" ], "sample_host_location_id": [], "data_size": "1.553 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 1.04, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5691859", "Number of Sequences": "1", "Longest Sequences (bp)": "5691859", "N50 (bp)": "5691859", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "69.0", "Number of CDSs": "5363", "Average Protein Length": "309.4", "Coding Ratio (%)": "87.5", "Number of rRNAs": "18", "Number of tRNAs": "67", "Number of CRISPRs": "5" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptomyces gobiensis", "strain": "strain=1_25", "accession": "GCA_021216675.1", "taxid": 2875706, "species_taxid": 2875706, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1895, "total_fragments": 1897, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Streptomyces radiopugnans", "strain": "strain=CGMCC 4.3519", "accession": "GCA_900110735.1", "taxid": 403935, "species_taxid": 403935, "relation_to_type": "type", "validated": true, "ani": 81.4345, "matched_fragments": 957, "total_fragments": 1897, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces pini", "strain": "strain=PL19", "accession": "GCA_900114215.1", "taxid": 1520580, "species_taxid": 1520580, "relation_to_type": "type", "validated": true, "ani": 81.3701, "matched_fragments": 955, "total_fragments": 1897, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces barkulensis", "strain": "strain=RC 1831", "accession": "GCA_002811705.2", "taxid": 1257026, "species_taxid": 1257026, "relation_to_type": "type", "validated": true, "ani": 81.3233, "matched_fragments": 940, "total_fragments": 1897, "ani_threshold": 95, "status": "below_threshold" }, { 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"strain": "strain=TRM SA0054", "accession": "GCA_002794255.1", "taxid": 2665496, "species_taxid": 2665496, "relation_to_type": "type", "validated": true, "ani": 81.1901, "matched_fragments": 926, "total_fragments": 1897, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces taklimakanensis", "strain": "strain=TRM43335", "accession": "GCA_009709575.1", "taxid": 2569853, "species_taxid": 2569853, "relation_to_type": "type", "validated": true, "ani": 81.1232, "matched_fragments": 906, "total_fragments": 1897, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces megasporus", "strain": "strain=NRRL B-16372", "accession": "GCA_000718985.1", "taxid": 44060, "species_taxid": 44060, "relation_to_type": "type", "validated": true, "ani": 81.1016, "matched_fragments": 897, "total_fragments": 1897, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces tardus", "strain": "strain=P38-E01", "accession": "GCA_018101125.2", "taxid": 2780544, "species_taxid": 2780544, "relation_to_type": "type", "validated": true, "ani": 80.8363, "matched_fragments": 895, "total_fragments": 1897, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces platensis", "strain": "strain=DSM 40041", "accession": "GCA_002119195.1", "taxid": 58346, "species_taxid": 58346, "relation_to_type": "type", "validated": true, "ani": 80.7013, "matched_fragments": 973, "total_fragments": 1897, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces platensis", "strain": "strain=ATCC 23948", "accession": "GCA_008704855.1", "taxid": 58346, "species_taxid": 58346, "relation_to_type": "type", "validated": true, "ani": 80.6845, "matched_fragments": 990, "total_fragments": 1897, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces angustmyceticus", "strain": "strain=JCM 4053", "accession": "GCA_019933235.1", "taxid": 285578, "species_taxid": 285578, "relation_to_type": "type", "validated": true, "ani": 80.6636, "matched_fragments": 1008, "total_fragments": 1897, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces palmae", "strain": "strain=JCM 31289", "accession": "GCA_004684805.1", "taxid": 1701085, "species_taxid": 1701085, "relation_to_type": "type", "validated": true, "ani": 80.6409, "matched_fragments": 826, "total_fragments": 1897, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces rapamycinicus", "strain": "strain=NRRL 5491", "accession": "GCA_024298965.1", "taxid": 1226757, "species_taxid": 1226757, "relation_to_type": "type", "validated": true, "ani": 80.5917, "matched_fragments": 1024, "total_fragments": 1897, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces lichenis", "strain": "strain=LCR6-01", "accession": "GCA_023218175.1", "taxid": 2306967, "species_taxid": 2306967, "relation_to_type": "type", "validated": true, "ani": 80.4013, "matched_fragments": 922, "total_fragments": 1897, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces albireticuli", "strain": "strain=NRRL B1670", "accession": "GCA_021228125.1", "taxid": 1940, "species_taxid": 1940, "relation_to_type": "type", "validated": true, "ani": 80.3718, "matched_fragments": 952, "total_fragments": 1897, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces monomycini", "strain": "strain=NRRL B-24309", "accession": "GCA_022271435.1", "taxid": 371720, "species_taxid": 371720, "relation_to_type": "type", "validated": true, "ani": 80.3596, "matched_fragments": 974, "total_fragments": 1897, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces otsuchiensis", "strain": "strain=OTB305", "accession": "GCA_004305975.1", "taxid": 2681388, "species_taxid": 2681388, "relation_to_type": "type", "validated": true, "ani": 79.8425, 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