{
    "type": "genome",
    "identifier": "GCF_021228235.1",
    "organism": "Pseudophaeobacter flagellatus",
    "title": "Pseudophaeobacter flagellatus",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Korea Research Institute of Bioscience and biotechnologyy",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_021228235.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN23500193",
        "wgs_master": "JAJQRG000000000.1",
        "refseq_category": "reference genome",
        "taxid": "2899119",
        "species_taxid": "2899119",
        "organism_name": "Pseudophaeobacter flagellatus",
        "infraspecific_name": "strain=MA21411-1",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/12/18",
        "asm_name": "ASM2122823v1",
        "asm_submitter": "Korea Research Institute of Bioscience and biotechnologyy",
        "gbrs_paired_asm": "GCA_021228235.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/021/228/235/GCF_021228235.1_ASM2122823v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4294042",
        "genome_size_ungapped": "4293942",
        "gc_percent": "59.000000",
        "replicon_count": "0",
        "scaffold_count": "28",
        "contig_count": "28",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_021228235.1-RS_2024_12_13",
        "annotation_date": "2024-12-13",
        "total_gene_count": "4106",
        "protein_coding_gene_count": "3987",
        "non_coding_gene_count": "60",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-12-18",
    "dateModified": "2021-12-18",
    "datePublished": "2021-12-18",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Pseudophaeobacter flagellatus"
        ],
        "sample_taxid": [
            "2899119"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "South Korea: seawater"
        ],
        "sample_host_location_id": [],
        "data_size": "1.209 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4294042",
        "Number of Sequences": "28",
        "Longest Sequences (bp)": "748081",
        "N50 (bp)": "403440",
        "Gap Ratio (%)": "0.002329",
        "GCcontent (%)": "59.2",
        "Number of CDSs": "4106",
        "Average Protein Length": "306.0",
        "Coding Ratio (%)": "87.8",
        "Number of rRNAs": "3",
        "Number of tRNAs": "53",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Pseudophaeobacter flagellatus",
                "strain": "strain=MA21411-1",
                "accession": "GCA_021228235.1",
                "taxid": 2899119,
                "species_taxid": 2899119,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1417,
                "total_fragments": 1418,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Pseudophaeobacter arcticus",
                "strain": "strain=DSM 23566",
                "accession": "GCA_000473205.1",
                "taxid": 385492,
                "species_taxid": 385492,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.4282,
                "matched_fragments": 997,
                "total_fragments": 1418,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudophaeobacter leonis",
                "strain": "strain=306",
                "accession": "GCA_002087335.1",
                "taxid": 1144477,
                "species_taxid": 1144477,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.7325,
                "matched_fragments": 890,
                "total_fragments": 1418,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Leisingera daeponensis",
                "strain": "strain=DSM 23529",
                "accession": "GCA_000473145.1",
                "taxid": 405746,
                "species_taxid": 405746,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.7961,
                "matched_fragments": 623,
                "total_fragments": 1418,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Leisingera aquaemixtae",
                "strain": "strain=CECT 8399",
                "accession": "GCA_001458395.1",
                "taxid": 1396826,
                "species_taxid": 1396826,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.776,
                "matched_fragments": 641,
                "total_fragments": 1418,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Leisingera methylohalidivorans",
                "strain": "strain=DSM 14336; MB2",
                "accession": "GCA_000511355.1",
                "taxid": 133924,
                "species_taxid": 133924,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.7182,
                "matched_fragments": 622,
                "total_fragments": 1418,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Leisingera caerulea",
                "strain": "strain=DSM 24564",
                "accession": "GCA_000473325.1",
                "taxid": 506591,
                "species_taxid": 506591,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.6423,
                "matched_fragments": 626,
                "total_fragments": 1418,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Phaeobacter inhibens",
                "strain": "strain=DSM 16374",
                "accession": "GCA_000473105.1",
                "taxid": 221822,
                "species_taxid": 221822,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.6059,
                "matched_fragments": 558,
                "total_fragments": 1418,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Phaeobacter gallaeciensis",
                "strain": "strain=DSM 26640",
                "accession": "GCA_000819625.1",
                "taxid": 60890,
                "species_taxid": 60890,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.5327,
                "matched_fragments": 536,
                "total_fragments": 1418,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Phaeobacter italicus",
                "strain": "strain=DSM 26436",
                "accession": "GCA_900113345.1",
                "taxid": 481446,
                "species_taxid": 481446,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.3683,
                "matched_fragments": 509,
                "total_fragments": 1418,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Zongyanglinia huanghaiensis",
                "strain": "strain=CY05",
                "accession": "GCA_009753675.1",
                "taxid": 2682100,
                "species_taxid": 2682100,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8538,
                "matched_fragments": 377,
                "total_fragments": 1418,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ruegeria marisrubri",
                "strain": "strain=ZGT118",
                "accession": "GCA_001507595.1",
                "taxid": 1685379,
                "species_taxid": 1685379,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7724,
                "matched_fragments": 405,
                "total_fragments": 1418,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Zongyanglinia marina",
                "strain": "strain=DSW4-44",
                "accession": "GCA_005771405.1",
                "taxid": 2578117,
                "species_taxid": 2578117,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.578,
                "matched_fragments": 395,
                "total_fragments": 1418,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Shimia sediminis",
                "strain": "strain=ZQ172",
                "accession": "GCA_003990645.1",
                "taxid": 2497945,
                "species_taxid": 2497945,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.507,
                "matched_fragments": 297,
                "total_fragments": 1418,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Salipiger marinus",
                "strain": "strain=DSM 26424",
                "accession": "GCA_900100085.1",
                "taxid": 555512,
                "species_taxid": 555512,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.0747,
                "matched_fragments": 316,
                "total_fragments": 1418,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Salipiger pallidus",
                "strain": "strain=CGMCC 1.15762",
                "accession": "GCA_014643635.1",
                "taxid": 1775170,
                "species_taxid": 1775170,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.8166,
                "matched_fragments": 186,
                "total_fragments": 1418,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000473205.1",
                "gtdb_species": "s__Pseudophaeobacter arcticus",
                "ani": 83.444,
                "matched_fragments": 995,
                "total_fragments": 1418,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Pseudophaeobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_905479575.1",
                "gtdb_species": "s__Pseudophaeobacter sp905479575",
                "ani": 82.4158,
                "matched_fragments": 902,
                "total_fragments": 1418,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Pseudophaeobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900313025.1",
                "gtdb_species": "s__Pseudophaeobacter sp900313025",
                "ani": 81.823,
                "matched_fragments": 941,
                "total_fragments": 1418,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Pseudophaeobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002087335.1",
                "gtdb_species": "s__Pseudophaeobacter leonis",
                "ani": 81.7243,
                "matched_fragments": 891,
                "total_fragments": 1418,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Pseudophaeobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001294455.1",
                "gtdb_species": "s__Pseudophaeobacter sp001294455",
                "ani": 81.5493,
                "matched_fragments": 898,
                "total_fragments": 1418,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Pseudophaeobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.13",
                "min_intra_species_ani": "98.13",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.97",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_001457775.1",
                "gtdb_species": "s__Pseudophaeobacter sp001457775",
                "ani": 81.2387,
                "matched_fragments": 820,
                "total_fragments": 1418,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Pseudophaeobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_015665415.1",
                "gtdb_species": "s__Pseudophaeobacter sp015665415",
                "ani": 81.2201,
                "matched_fragments": 883,
                "total_fragments": 1418,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Pseudophaeobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000152965.1",
                "gtdb_species": "s__Pseudophaeobacter sp000152965",
                "ani": 80.9411,
                "matched_fragments": 854,
                "total_fragments": 1418,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Pseudophaeobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.26",
                "min_intra_species_ani": "98.26",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_013214575.1",
                "gtdb_species": "s__Parasedimentitalea sp013214575",
                "ani": 78.7064,
                "matched_fragments": 561,
                "total_fragments": 1418,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Parasedimentitalea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.277,
        "cell_length": 0.229,
        "doubling_h": null,
        "growth_tmp": 23.75,
        "optimum_tmp": 19.5,
        "optimum_ph": 8.0,
        "genome_size": 5049234.0,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Pseudophaeobacter",
        "flagellatus"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}