{ "type": "genome", "identifier": "GCF_021233055.1", "organism": "Spirosoma oryzicola", "title": "Spirosoma oryzicola", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Agricultural Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_021233055.1", "bioproject": "PRJNA224116", "biosample": "SAMN23482382", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2898794", "species_taxid": "2898794", "organism_name": "Spirosoma oryzicola", "infraspecific_name": "strain=RHs26", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/12/20", "asm_name": "ASM2123305v1", "asm_submitter": "National Institute of Agricultural Sciences", "gbrs_paired_asm": "GCA_021233055.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/021/233/055/GCF_021233055.1_ASM2123305v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7333475", "genome_size_ungapped": "7333475", "gc_percent": "49.500000", "replicon_count": "10", "scaffold_count": "10", "contig_count": "10", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_021233055.1-RS_2024_04_22", "annotation_date": "2024-04-22", "total_gene_count": "6115", "protein_coding_gene_count": "6041", "non_coding_gene_count": "55", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-12-20", "dateModified": "2021-12-20", "datePublished": "2021-12-20", "_annotation": { "sample_count": 1, "sample_organism": [ "Spirosoma oryzicola" ], "sample_taxid": [ "2898794" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Gyeonggi-do, Yeoju-si, Daesin-myeon" ], "sample_host_location_id": [], "data_size": "2.090 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7333475", "Number of Sequences": "10", "Longest Sequences (bp)": "5713068", "N50 (bp)": "5713068", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "49.5", "Number of CDSs": "6009", "Average Protein Length": "349.4", "Coding Ratio (%)": "85.9", "Number of rRNAs": "6", "Number of tRNAs": "45", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Spirosoma agri", "strain": "strain=KCTC 52727", "accession": "GCA_010747415.1", "taxid": 1987381, "species_taxid": 1987381, "relation_to_type": "type", "validated": true, "ani": 78.6811, 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95, "status": "below_threshold" }, { "organism_name": "Spirosoma taeanense", "strain": "strain=TS118", "accession": "GCA_013127955.1", "taxid": 2735870, "species_taxid": 2735870, "relation_to_type": "type", "validated": true, "ani": 77.494, "matched_fragments": 463, "total_fragments": 2440, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma fluviale", "strain": "strain=DSM 29961", "accession": "GCA_900230225.1", "taxid": 1597977, "species_taxid": 1597977, "relation_to_type": "type", "validated": true, "ani": 77.4724, "matched_fragments": 472, "total_fragments": 2440, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma oryzae", "strain": "strain=DSM 28354", "accession": "GCA_003002825.1", "taxid": 1469603, "species_taxid": 1469603, "relation_to_type": "type", "validated": true, "ani": 77.3511, "matched_fragments": 405, "total_fragments": 2440, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma endophyticum", "strain": "strain=DSM 26130", "accession": "GCA_900112365.1", "taxid": 662367, "species_taxid": 662367, "relation_to_type": "type", "validated": true, "ani": 77.2823, "matched_fragments": 490, "total_fragments": 2440, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma aerolatum", "strain": "strain=KACC 17939", "accession": "GCA_002056795.1", "taxid": 1211326, "species_taxid": 1211326, "relation_to_type": "type", "validated": true, "ani": 77.2343, "matched_fragments": 404, "total_fragments": 2440, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma arboris", "strain": "strain=HMF4905", "accession": "GCA_009754945.1", "taxid": 2682092, "species_taxid": 2682092, "relation_to_type": "type", "validated": true, "ani": 77.1665, "matched_fragments": 411, "total_fragments": 2440, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma validum", "strain": "strain=BT704", "accession": "GCA_014699035.1", "taxid": 2771355, "species_taxid": 2771355, "relation_to_type": "type", "validated": true, "ani": 77.1216, "matched_fragments": 463, "total_fragments": 2440, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma lacussanchae", "strain": "strain=CPCC 100624", "accession": "GCA_005870035.1", "taxid": 1884249, "species_taxid": 1884249, "relation_to_type": "type", "validated": true, "ani": 77.0628, "matched_fragments": 414, "total_fragments": 2440, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma utsteinense", "strain": "strain=LMG 31447", "accession": "GCA_014282275.1", "taxid": 2585773, "species_taxid": 2585773, "relation_to_type": "type", "validated": true, "ani": 77.0385, "matched_fragments": 386, "total_fragments": 2440, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma sordidisoli", "strain": "strain=TY50", "accession": "GCA_004138325.1", "taxid": 2502893, "species_taxid": 2502893, "relation_to_type": "type", "validated": true, "ani": 77.0301, "matched_fragments": 436, "total_fragments": 2440, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma panaciterrae", "strain": "strain=DSM 21099", "accession": "GCA_000374025.1", "taxid": 496058, "species_taxid": 496058, "relation_to_type": "type", "validated": true, "ani": 76.9006, "matched_fragments": 447, "total_fragments": 2440, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Fibrella rubiginis", "strain": "strain=HMF5335", "accession": "GCA_017353185.1", "taxid": 2817060, "species_taxid": 2817060, "relation_to_type": "type", "validated": true, "ani": 76.1132, "matched_fragments": 164, "total_fragments": 2440, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Siphonobacter curvatus", "strain": "strain=HR-U", "accession": "GCA_002943425.1", "taxid": 2094562, "species_taxid": 2094562, "relation_to_type": "type", "validated": true, "ani": 75.616, "matched_fragments": 91, "total_fragments": 2440, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_010747415.1", "gtdb_species": "s__Spirosoma agri", "ani": 78.6861, "matched_fragments": 866, "total_fragments": 2440, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Spirosomaceae;g__Spirosoma", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_011604685.1", "gtdb_species": "s__Spirosoma aureum", "ani": 78.589, "matched_fragments": 848, "total_fragments": 2440, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Spirosomaceae;g__Spirosoma", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", 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"min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_000024525.1", "gtdb_species": "s__Spirosoma linguale", "ani": 77.5994, "matched_fragments": 515, "total_fragments": 2440, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Spirosomaceae;g__Spirosoma", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_013127955.1", "gtdb_species": "s__Spirosoma taeanense", "ani": 77.5002, "matched_fragments": 462, "total_fragments": 2440, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Spirosomaceae;g__Spirosoma", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { 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