{ "type": "genome", "identifier": "GCF_021245805.1", "organism": "Mangrovimonas futianensis", "title": "Mangrovimonas futianensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Jinan University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_021245805.1", "bioproject": "PRJNA224116", "biosample": "SAMN23138929", "wgs_master": "JAJJNF000000000.1", "refseq_category": "reference genome", "taxid": "2895523", "species_taxid": "2895523", "organism_name": "Mangrovimonas futianensis", "infraspecific_name": "strain=AS18", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/12/20", "asm_name": "ASM2124580v1", "asm_submitter": "Jinan University", "gbrs_paired_asm": "GCA_021245805.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/021/245/805/GCF_021245805.1_ASM2124580v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3699592", "genome_size_ungapped": "3699592", "gc_percent": "36.000000", "replicon_count": "0", "scaffold_count": "112", "contig_count": "112", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_021245805.1-RS_2024_08_15", "annotation_date": "2024-08-15", "total_gene_count": "3330", "protein_coding_gene_count": "3264", "non_coding_gene_count": "45", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-12-20", "dateModified": "2021-12-20", "datePublished": "2021-12-20", "_annotation": { "sample_count": 1, "sample_organism": [ "Mangrovimonas futianensis" ], "sample_taxid": [ "2895523" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Shenzhen" ], "sample_host_location_id": [], "data_size": "1.044 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3699592", "Number of Sequences": "112", "Longest Sequences (bp)": "640312", "N50 (bp)": "410776", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "36.1", "Number of CDSs": "3187", "Average Protein Length": "346.2", "Coding Ratio (%)": "89.5", "Number of rRNAs": "3", "Number of tRNAs": "38", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Mangrovimonas xylaniphaga", "strain": "strain=ST2L12", "accession": "GCA_001280435.1", "taxid": 1645915, "species_taxid": 1645915, "relation_to_type": "type", "validated": true, "ani": 77.6283, "matched_fragments": 220, "total_fragments": 1211, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hanstruepera neustonica", "strain": "strain=JCM19743", "accession": "GCA_002895005.1", "taxid": 1445657, "species_taxid": 1445657, "relation_to_type": "type", "validated": true, "ani": 77.5061, "matched_fragments": 209, "total_fragments": 1211, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mangrovimonas spongiae", "strain": "strain=HN-E26", "accession": "GCA_003944795.1", "taxid": 2494697, "species_taxid": 2494697, "relation_to_type": "type", "validated": true, "ani": 77.4998, "matched_fragments": 204, "total_fragments": 1211, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hanstruepera flava", "strain": "strain=NBU2984", "accession": "GCA_023634025.1", "taxid": 2930218, "species_taxid": 2930218, "relation_to_type": "type", "validated": true, "ani": 77.4468, "matched_fragments": 190, "total_fragments": 1211, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontimicrobium aquaticum", "strain": "strain=CAU 1491", "accession": "GCA_005047595.1", "taxid": 2565367, "species_taxid": 2565367, "relation_to_type": "type", "validated": true, "ani": 77.4348, "matched_fragments": 142, "total_fragments": 1211, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Xanthomarina gelatinilytica", "strain": "strain=AK20", "accession": "GCA_000348685.1", "taxid": 1137281, "species_taxid": 1137281, "relation_to_type": "type", "validated": true, "ani": 77.3654, "matched_fragments": 174, "total_fragments": 1211, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hanstruepera ponticola", "strain": "strain=MM-14", "accession": "GCA_012931685.1", "taxid": 2042995, "species_taxid": 2042995, "relation_to_type": "type", "validated": true, "ani": 77.3505, "matched_fragments": 184, "total_fragments": 1211, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Olleya aquimaris", "strain": "strain=DSM 24464", "accession": "GCA_003259525.1", "taxid": 639310, "species_taxid": 639310, "relation_to_type": "type", "validated": true, "ani": 77.3103, "matched_fragments": 133, "total_fragments": 1211, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Snuella sedimenti", "strain": "strain=CAU 1569", "accession": "GCA_016428595.1", "taxid": 2798802, "species_taxid": 2798802, "relation_to_type": "type", "validated": true, "ani": 77.2002, "matched_fragments": 120, "total_fragments": 1211, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hyunsoonleella flava", "strain": "strain=T58", "accession": "GCA_004310325.1", "taxid": 2527939, "species_taxid": 2527939, "relation_to_type": "type", "validated": true, "ani": 77.1981, "matched_fragments": 130, "total_fragments": 1211, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aurantibacter aestuarii", "strain": "strain=KCTC 32269", "accession": "GCA_003008425.1", "taxid": 1266046, "species_taxid": 1266046, "relation_to_type": "type", "validated": true, "ani": 77.1763, "matched_fragments": 122, "total_fragments": 1211, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algibacter amylolyticus", "strain": "strain=RU-4-M-4", "accession": "GCA_007559325.1", "taxid": 1608400, "species_taxid": 1608400, "relation_to_type": "type", "validated": true, "ani": 77.1657, "matched_fragments": 135, "total_fragments": 1211, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Seonamhaeicola aphaedonensis", "strain": "strain=CECT 8487", "accession": "GCA_003386195.1", "taxid": 1461338, "species_taxid": 1461338, "relation_to_type": "type", "validated": true, "ani": 77.1379, "matched_fragments": 136, "total_fragments": 1211, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algibacter amylolyticus", "strain": "strain=DSM 29199", "accession": "GCA_014202225.1", "taxid": 1608400, "species_taxid": 1608400, "relation_to_type": "type", "validated": true, "ani": 77.1291, "matched_fragments": 137, "total_fragments": 1211, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hanstruepera marina", "strain": "strain=NBU2968", "accession": "GCA_019880635.1", "taxid": 2873265, "species_taxid": 2873265, "relation_to_type": "type", "validated": true, "ani": 77.1218, "matched_fragments": 191, "total_fragments": 1211, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bizionia algoritergicola", "strain": "strain=APA-1", "accession": "GCA_008086165.1", "taxid": 291187, "species_taxid": 291187, "relation_to_type": "type", "validated": true, "ani": 77.1214, "matched_fragments": 173, "total_fragments": 1211, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kordia zhangzhouensis", "strain": "strain=MCCC 1A00726", "accession": "GCA_001005305.1", "taxid": 1620405, "species_taxid": 1620405, "relation_to_type": "type", "validated": true, "ani": 77.015, "matched_fragments": 95, "total_fragments": 1211, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella psychrotolerans", "strain": "strain=RS-3", "accession": "GCA_000427335.1", "taxid": 1344585, "species_taxid": 1344585, "relation_to_type": "type", "validated": true, "ani": 77.0118, "matched_fragments": 132, "total_fragments": 1211, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella endarachnes", "strain": "strain=HL2-2", "accession": "GCA_009741275.1", "taxid": 2681965, "species_taxid": 2681965, "relation_to_type": "type", "validated": true, "ani": 76.999, "matched_fragments": 145, "total_fragments": 1211, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Yeosuana marina", "strain": "strain=JLT21", "accession": "GCA_011762485.1", "taxid": 1565536, "species_taxid": 1565536, "relation_to_type": "type", "validated": true, "ani": 76.9777, "matched_fragments": 150, "total_fragments": 1211, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Psychroserpens mesophilus", "strain": "strain=JCM 13413", "accession": "GCA_000826645.1", "taxid": 325473, "species_taxid": 325473, "relation_to_type": "type", "validated": true, "ani": 76.9296, "matched_fragments": 143, "total_fragments": 1211, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Confluentibacter lentus", "strain": "strain=HJM-3", "accession": "GCA_002806995.1", "taxid": 1699412, "species_taxid": 1699412, "relation_to_type": "type", "validated": true, "ani": 76.9251, "matched_fragments": 156, "total_fragments": 1211, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Changchengzhania lutea", "strain": "strain=SM1355", "accession": "GCA_006974145.1", "taxid": 2049305, "species_taxid": 2049305, "relation_to_type": "type", "validated": true, "ani": 76.9085, "matched_fragments": 147, "total_fragments": 1211, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lacinutrix himadriensis", "strain": "strain=E4-9a", "accession": "GCA_001418105.1", "taxid": 641549, "species_taxid": 641549, "relation_to_type": "type", "validated": true, "ani": 76.8508, "matched_fragments": 178, "total_fragments": 1211, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella echinorum", "strain": "strain=KCTC 22026", "accession": "GCA_014284085.1", "taxid": 538189, "species_taxid": 538189, "relation_to_type": "type", "validated": true, "ani": 76.8046, "matched_fragments": 156, "total_fragments": 1211, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella echinorum", "strain": "strain=KCTC 22026", "accession": "GCA_014297365.1", "taxid": 538189, "species_taxid": 538189, "relation_to_type": "type", "validated": true, "ani": 76.8046, "matched_fragments": 156, "total_fragments": 1211, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gelidibacter algens", "strain": "strain=ACAM 536", "accession": "GCA_001678675.1", "taxid": 49280, "species_taxid": 49280, "relation_to_type": "type", "validated": true, "ani": 76.7786, "matched_fragments": 122, "total_fragments": 1211, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gelidibacter algens", "strain": "strain=DSM 12408", "accession": "GCA_003259265.1", "taxid": 49280, "species_taxid": 49280, "relation_to_type": "type", "validated": true, "ani": 76.778, "matched_fragments": 125, "total_fragments": 1211, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aestuariivivens sediminicola", "strain": "strain=MTV5-3", "accession": "GCA_022662015.1", "taxid": 2913560, "species_taxid": 2913560, "relation_to_type": "type", "validated": true, "ani": 76.6615, "matched_fragments": 82, "total_fragments": 1211, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gelidibacter mesophilus", "strain": "strain=DSM 14095", "accession": "GCA_000423005.1", "taxid": 169050, "species_taxid": 169050, "relation_to_type": "type", "validated": true, "ani": 76.6485, "matched_fragments": 107, "total_fragments": 1211, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Joostella atrarenae", "strain": "strain=M1-2", "accession": "GCA_021764745.1", "taxid": 679257, "species_taxid": 679257, "relation_to_type": "type", "validated": true, "ani": 76.4971, "matched_fragments": 95, "total_fragments": 1211, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lutibacter oricola", "strain": "strain=DSM 24956", "accession": "GCA_900106565.1", "taxid": 762486, "species_taxid": 762486, "relation_to_type": "type", "validated": true, "ani": 76.4109, "matched_fragments": 77, "total_fragments": 1211, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium indicum", "strain": "strain=GPTSA100-9", "accession": "GCA_000455605.1", "taxid": 312277, "species_taxid": 312277, "relation_to_type": "type", "validated": true, "ani": 76.3034, "matched_fragments": 72, "total_fragments": 1211, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001280515.1", "gtdb_species": "s__Mangrovimonas sp001280515", "ani": 96.8622, "matched_fragments": 1044, "total_fragments": 1211, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Mangrovimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.69", "min_intra_species_ani": "96.69", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.89", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_001280505.1", "gtdb_species": "s__Mangrovimonas_A sp001280505", "ani": 77.6575, "matched_fragments": 211, "total_fragments": 1211, "gtdb_taxonomy": 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