{ "type": "genome", "identifier": "GCF_021245985.1", "organism": "Flavobacterium soyae", "title": "Flavobacterium soyae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Guangdong Academy of Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_021245985.1", "bioproject": "PRJNA224116", "biosample": "SAMN23929719", "wgs_master": "JAJQXA000000000.1", "refseq_category": "na", "taxid": "2903098", "species_taxid": "2903098", "organism_name": "Flavobacterium soyae", "infraspecific_name": "strain=SCIV07", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/12/20", "asm_name": "ASM2124598v1", "asm_submitter": "Guangdong Academy of Sciences", "gbrs_paired_asm": "GCA_021245985.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/021/245/985/GCF_021245985.1_ASM2124598v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5212224", "genome_size_ungapped": "5211831", "gc_percent": "33.500000", "replicon_count": "0", "scaffold_count": "84", "contig_count": "84", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_021245985.1-RS_2024_08_03", "annotation_date": "2024-08-03", "total_gene_count": "4340", "protein_coding_gene_count": "4253", "non_coding_gene_count": "64", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-12-20", "dateModified": "2021-12-20", "datePublished": "2021-12-20", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavobacterium soyae" ], "sample_taxid": [ "2903098" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "1.450 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5212224", "Number of Sequences": "84", "Longest Sequences (bp)": "560026", "N50 (bp)": "254525", "Gap Ratio (%)": "0.007540", "GCcontent (%)": "33.7", "Number of CDSs": "4215", "Average Protein Length": "353.8", "Coding Ratio (%)": "85.8", "Number of rRNAs": "5", "Number of tRNAs": "52", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Flavobacterium soyae", "strain": "strain=SCIV07", "accession": "GCA_021245985.1", "taxid": 2903098, "species_taxid": 2903098, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1710, "total_fragments": 1714, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Flavobacterium panici", "strain": "", "accession": "GCA_903819335.1", "taxid": 2654843, "species_taxid": 2654843, "relation_to_type": "type", "validated": true, "ani": 90.8124, "matched_fragments": 1369, "total_fragments": 1714, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium defluvii", "strain": "strain=DSM 17963", "accession": "GCA_900129555.1", "taxid": 370979, "species_taxid": 370979, "relation_to_type": "type", "validated": true, "ani": 87.0706, "matched_fragments": 1235, "total_fragments": 1714, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium johnsoniae", "strain": "strain=ATCC 17061", "accession": "GCA_002221975.1", "taxid": 986, "species_taxid": 986, "relation_to_type": "type", "validated": true, "ani": 86.0767, "matched_fragments": 1193, "total_fragments": 1714, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium johnsoniae", "strain": "strain=UW101; ATCC 17061", "accession": "GCA_000016645.1", "taxid": 986, "species_taxid": 986, "relation_to_type": "type", "validated": true, "ani": 86.0153, "matched_fragments": 1218, "total_fragments": 1714, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium johnsoniae", "strain": "strain=DSM 2064", "accession": "GCA_900142355.1", "taxid": 986, "species_taxid": 986, "relation_to_type": "type", "validated": true, "ani": 85.9653, "matched_fragments": 1232, "total_fragments": 1714, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium plurextorum", "strain": "strain=CCUG 60112", "accession": "GCA_002217395.1", "taxid": 1114867, "species_taxid": 1114867, "relation_to_type": "type", "validated": true, "ani": 84.4099, "matched_fragments": 1023, "total_fragments": 1714, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium resistens", "strain": "strain=DSM 19382", "accession": "GCA_009674815.1", "taxid": 443612, "species_taxid": 443612, "relation_to_type": "type", "validated": true, "ani": 84.2759, "matched_fragments": 1049, "total_fragments": 1714, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium resistens", "strain": "strain=DSM 19382", "accession": "GCA_900182645.1", "taxid": 443612, "species_taxid": 443612, "relation_to_type": "type", "validated": true, "ani": 84.2244, "matched_fragments": 1055, "total_fragments": 1714, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium endoglycinae", "strain": "strain=BB8", "accession": "GCA_017352115.1", "taxid": 2816357, "species_taxid": 2816357, "relation_to_type": "type", "validated": true, "ani": 84.0893, "matched_fragments": 1185, "total_fragments": 1714, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium chilense", "strain": "strain=DSM 24724", "accession": "GCA_900142685.1", "taxid": 946677, 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