{ "type": "genome", "identifier": "GCF_021249345.1", "organism": "Halobacterium wangiae", "title": "Halobacterium wangiae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Jiangsu University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_021249345.1", "bioproject": "PRJNA224116", "biosample": "SAMN23798262", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2902623", "species_taxid": "2902623", "organism_name": "Halobacterium wangiae", "infraspecific_name": "strain=Gai3-17", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/12/21", "asm_name": "ASM2124934v1", "asm_submitter": "Jiangsu University", "gbrs_paired_asm": "GCA_021249345.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/021/249/345/GCF_021249345.1_ASM2124934v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "archaea", "genome_size": "3112195", "genome_size_ungapped": "3112195", "gc_percent": "67.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_021249345.1-RS_2024_06_10", "annotation_date": "2024-06-10", "total_gene_count": "3325", "protein_coding_gene_count": "3253", "non_coding_gene_count": "52", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-12-21", "dateModified": "2021-12-21", "datePublished": "2021-12-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Halobacterium wangiae" ], "sample_taxid": [ "2902623" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Tibet" ], "sample_host_location_id": [], "data_size": "0.840 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3112195", "Number of Sequences": "1", "Longest Sequences (bp)": "3112195", "N50 (bp)": "3112195", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "67.3", "Number of CDSs": "3275", "Average Protein Length": "282.7", "Coding Ratio (%)": "89.2", "Number of rRNAs": "3", "Number of tRNAs": "48", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Halobacterium litoreum", "strain": "strain=ZS-54-S2", "accession": "GCA_021233415.1", "taxid": 2039234, "species_taxid": 2039234, "relation_to_type": "type", "validated": true, "ani": 84.1434, "matched_fragments": 665, "total_fragments": 1037, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halobacterium hubeiense", "strain": "strain=JI20-1", "accession": "GCA_001488575.1", "taxid": 1407499, "species_taxid": 1407499, "relation_to_type": "type", "validated": true, "ani": 83.4922, "matched_fragments": 597, "total_fragments": 1037, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halobacterium noricense", "strain": "strain=JCM 15102", "accession": "GCA_021233435.1", "taxid": 223182, "species_taxid": 223182, "relation_to_type": "type", "validated": true, "ani": 83.0582, "matched_fragments": 596, "total_fragments": 1037, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halobacterium bonnevillei", "strain": "strain=PCN9", "accession": "GCA_009831555.1", "taxid": 2692200, "species_taxid": 2692200, "relation_to_type": "type", "validated": true, "ani": 82.9799, "matched_fragments": 554, "total_fragments": 1037, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halobacterium jilantaiense", "strain": "strain=CGMCC 1.5337", "accession": "GCA_900110535.1", "taxid": 355548, "species_taxid": 355548, "relation_to_type": "type", "validated": true, "ani": 82.3975, "matched_fragments": 631, "total_fragments": 1037, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halobacterium salinarum", "strain": "strain=91-R6", "accession": "GCA_004799605.1", "taxid": 2242, "species_taxid": 2242, "relation_to_type": "type", "validated": true, "ani": 80.5176, "matched_fragments": 443, "total_fragments": 1037, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halarchaeum rubridurum", "strain": "strain=JCM 16108", "accession": "GCA_014647115.1", "taxid": 489911, "species_taxid": 489911, "relation_to_type": "type", "validated": true, "ani": 79.2092, "matched_fragments": 411, "total_fragments": 1037, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 95.83, "contamination": 4.17, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000230955.2", "gtdb_species": "s__Halobacterium sp000230955", "ani": 89.979, "matched_fragments": 805, "total_fragments": 1037, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Halobacteriaceae;g__Halobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009741975.1", "gtdb_species": "s__Halobacterium sp009741975", "ani": 84.1474, "matched_fragments": 509, "total_fragments": 1037, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Halobacteriaceae;g__Halobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_011734195.1", "gtdb_species": "s__Halobacterium sp011734195", "ani": 83.6087, "matched_fragments": 640, "total_fragments": 1037, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Halobacteriaceae;g__Halobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001488575.1", "gtdb_species": "s__Halobacterium hubeiense", "ani": 83.4919, "matched_fragments": 597, "total_fragments": 1037, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Halobacteriaceae;g__Halobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.52", "min_intra_species_ani": "99.49", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.94", "num_clustered_genomes": 8, "status": "-" }, { "accession": "GCF_001485535.1", "gtdb_species": "s__Halobacterium sp001485535", "ani": 83.1058, "matched_fragments": 601, "total_fragments": 1037, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Halobacteriaceae;g__Halobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009831555.1", "gtdb_species": "s__Halobacterium sp009831555", "ani": 82.9383, "matched_fragments": 557, "total_fragments": 1037, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Halobacteriaceae;g__Halobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900110535.1", "gtdb_species": "s__Halobacterium jilantaiense", "ani": 82.4053, "matched_fragments": 630, "total_fragments": 1037, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Halobacteriaceae;g__Halobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.302, "cell_length": 0.0, "doubling_h": 0.938, "growth_tmp": 39.016, "optimum_tmp": 45.292, "optimum_ph": 7.25, "genome_size": 2902821.046, "gc_content": 63.993, "coding_genes": 2916.433, "rRNA16S_genes": 1.2, "tRNA_genes": 45.333, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": 1.0, "facultative_respiration": 0.5, "anaerobic_respiration": 0.0, "aerobic_respiration": 0.5, "mesophilic_range_tmp": 0.0, "thermophilic_range_tmp": 1.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Halobacterium", "wangiae" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }