{
    "type": "genome",
    "identifier": "GCF_021271025.1",
    "organism": "Curtobacterium flaccumfaciens pv. allii",
    "title": "Curtobacterium flaccumfaciens pv. allii",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Texas A & M University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_021271025.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN21582544",
        "wgs_master": "JAIWKR000000000.1",
        "refseq_category": "na",
        "taxid": "2878384",
        "species_taxid": "2035",
        "organism_name": "Curtobacterium flaccumfaciens pv. allii",
        "infraspecific_name": "strain=20TX0166",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/12/22",
        "asm_name": "ASM2127102v1",
        "asm_submitter": "Texas A & M University",
        "gbrs_paired_asm": "GCA_021271025.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/021/271/025/GCF_021271025.1_ASM2127102v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3986426",
        "genome_size_ungapped": "3986426",
        "gc_percent": "70.500000",
        "replicon_count": "0",
        "scaffold_count": "35",
        "contig_count": "35",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_021271025.1-RS_2024_07_28",
        "annotation_date": "2024-07-28",
        "total_gene_count": "3825",
        "protein_coding_gene_count": "3750",
        "non_coding_gene_count": "54",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-12-22",
    "dateModified": "2021-12-22",
    "datePublished": "2021-12-22",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Curtobacterium flaccumfaciens pv. allii"
        ],
        "sample_taxid": [
            "2878384"
        ],
        "sample_host_organism": [
            "Onion"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA"
        ],
        "sample_host_location_id": [],
        "data_size": "1.057 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3986426",
        "Number of Sequences": "35",
        "Longest Sequences (bp)": "865032",
        "N50 (bp)": "502963",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "70.7",
        "Number of CDSs": "3792",
        "Average Protein Length": "315.4",
        "Coding Ratio (%)": "90.0",
        "Number of rRNAs": "3",
        "Number of tRNAs": "55",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Curtobacterium allii",
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                "species_taxid": 2878384,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 1313,
                "total_fragments": 1314,
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                "status": "inconclusive"
            },
            {
                "organism_name": "Curtobacterium flaccumfaciens",
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                "accession": "GCA_024997845.1",
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                "species_taxid": 2035,
                "relation_to_type": "suspected-type",
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                "ani": 96.0766,
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                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Curtobacterium flaccumfaciens",
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                "validated": true,
                "ani": 96.0694,
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                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Curtobacterium pusillum",
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                "taxid": 69373,
                "species_taxid": 69373,
                "relation_to_type": "suspected-type",
                "validated": true,
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                "matched_fragments": 892,
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                "ani_threshold": 95,
                "status": "below_threshold"
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            {
                "organism_name": "Curtobacterium albidum",
                "strain": "strain=DSM 20512",
                "accession": "GCA_013359825.1",
                "taxid": 50728,
                "species_taxid": 50728,
                "relation_to_type": "type",
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                "ani": 85.5837,
                "matched_fragments": 906,
                "total_fragments": 1314,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Curtobacterium citreum",
                "strain": "strain=LMG8786T",
                "accession": "GCA_024997915.1",
                "taxid": 2036,
                "species_taxid": 2036,
                "relation_to_type": "type",
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                "ani": 85.5648,
                "matched_fragments": 901,
                "total_fragments": 1314,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Curtobacterium citreum",
                "strain": "strain=JCM 1345",
                "accession": "GCA_014646735.1",
                "taxid": 2036,
                "species_taxid": 2036,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.5607,
                "matched_fragments": 893,
                "total_fragments": 1314,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Curtobacterium luteum",
                "strain": "strain=JCM 1480",
                "accession": "GCA_014646995.1",
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                "species_taxid": 33881,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.0632,
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                "total_fragments": 1314,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Curtobacterium herbarum",
                "strain": "strain=DSM 14013",
                "accession": "GCA_016907335.1",
                "taxid": 150122,
                "species_taxid": 150122,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 84.9812,
                "matched_fragments": 867,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Curtobacterium herbarum",
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                "accession": "GCA_025000405.1",
                "taxid": 150122,
                "species_taxid": 150122,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 84.9536,
                "matched_fragments": 875,
                "total_fragments": 1314,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_013359815.1",
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                "matched_fragments": 1104,
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Curtobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.92",
                "min_intra_species_ani": "95.24",
                "mean_intra_species_af": "0.91",
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                "num_clustered_genomes": 53,
                "status": "conclusive"
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            {
                "accession": "GCF_018598555.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Curtobacterium",
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                "num_clustered_genomes": 4,
                "status": "-"
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                "mean_intra_species_ani": "N/A",
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            },
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                "accession": "GCF_003752025.1",
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                "num_clustered_genomes": 1,
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            },
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
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        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": 27.667,
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        "rRNA16S_genes": 3.0,
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    "_genome_taxon": [
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        "pv.",
        "allii"
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    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}