{ "type": "genome", "identifier": "GCF_021271205.1", "organism": "Pseudomonas uvaldensis", "title": "Pseudomonas uvaldensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Texas A & M University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_021271205.1", "bioproject": "PRJNA224116", "biosample": "SAMN21582561", "wgs_master": "JAIWKS000000000.1", "refseq_category": "reference genome", "taxid": "2878385", "species_taxid": "2878385", "organism_name": "Pseudomonas uvaldensis", "infraspecific_name": "strain=20TX0172", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/12/22", "asm_name": "ASM2127120v1", "asm_submitter": "Texas A & M University", "gbrs_paired_asm": "GCA_021271205.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/021/271/205/GCF_021271205.1_ASM2127120v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5976542", "genome_size_ungapped": "5976542", "gc_percent": "61.000000", "replicon_count": "0", "scaffold_count": "65", "contig_count": "65", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_021271205.1-RS_2024_12_13", "annotation_date": "2024-12-13", "total_gene_count": "5349", "protein_coding_gene_count": "5209", "non_coding_gene_count": "62", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-12-22", "dateModified": "2021-12-22", "datePublished": "2021-12-22", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudomonas uvaldensis" ], "sample_taxid": [ "2878385" ], "sample_host_organism": [ "Onion" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas mediterranea", "strain": "strain=CFBP 5447", "accession": "GCA_000774145.1", "taxid": 183795, "species_taxid": 183795, "relation_to_type": "type", "validated": true, "ani": 87.4498, "matched_fragments": 1585, "total_fragments": 1971, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas kilonensis", "strain": "strain=DSM 13647", "accession": "GCA_001269885.1", "taxid": 132476, "species_taxid": 132476, "relation_to_type": "type", "validated": true, "ani": 87.335, "matched_fragments": 1530, "total_fragments": 1971, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas brassicacearum", "strain": "strain=JCM 11938", "accession": "GCA_012034345.1", "taxid": 930166, "species_taxid": 930166, "relation_to_type": "suspected-type", "validated": true, "ani": 87.284, "matched_fragments": 1559, "total_fragments": 1971, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas brassicacearum subsp. brassicacearum", "strain": "strain=CCUG 51508", "accession": "GCA_008801605.1", "taxid": 86264, "species_taxid": 930166, "relation_to_type": "type", "validated": true, "ani": 87.2644, "matched_fragments": 1560, "total_fragments": 1971, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas thivervalensis", "strain": "strain=DSM 13194", "accession": "GCA_001269655.1", "taxid": 86265, "species_taxid": 86265, "relation_to_type": "type", "validated": true, "ani": 87.1974, "matched_fragments": 1567, "total_fragments": 1971, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas viciae", "strain": "strain=11K1", "accession": "GCA_004786035.1", "taxid": 2505979, "species_taxid": 2505979, "relation_to_type": "type", "validated": true, "ani": 87.1253, "matched_fragments": 1583, "total_fragments": 1971, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas corrugata", "strain": "strain=NCPPB2445", "accession": "GCA_003699065.1", "taxid": 47879, "species_taxid": 47879, "relation_to_type": "type", "validated": true, "ani": 87.0063, "matched_fragments": 1516, "total_fragments": 1971, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas corrugata", "strain": "strain=DSM 7228", "accession": "GCA_001269905.1", "taxid": 47879, "species_taxid": 47879, "relation_to_type": "type", "validated": true, "ani": 86.9911, "matched_fragments": 1540, "total_fragments": 1971, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas corrugata", "strain": "strain=NCPPB2445", "accession": "GCA_001411965.1", "taxid": 47879, "species_taxid": 47879, "relation_to_type": "type", "validated": true, "ani": 86.9761, "matched_fragments": 1541, "total_fragments": 1971, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas zanjanensis", "strain": "strain=SWRI12", "accession": "GCA_014268745.2", "taxid": 2745496, "species_taxid": 2745496, "relation_to_type": "type", "validated": true, "ani": 86.8504, "matched_fragments": 1522, "total_fragments": 1971, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas rhizophila", "strain": "strain=S211", "accession": "GCA_003033885.1", "taxid": 2045200, "species_taxid": 2045200, "relation_to_type": "type", "validated": true, "ani": 86.5578, "matched_fragments": 1537, "total_fragments": 1971, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas sputi", "strain": "strain=BML-PP014", "accession": "GCA_021603585.1", "taxid": 2892325, "species_taxid": 2892325, "relation_to_type": "type", "validated": true, "ani": 83.6077, "matched_fragments": 1227, "total_fragments": 1971, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas pharyngis", "strain": "strain=BML-PP036", "accession": "GCA_021602345.1", "taxid": 2892333, "species_taxid": 2892333, "relation_to_type": "type", "validated": true, "ani": 83.5764, "matched_fragments": 1268, "total_fragments": 1971, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas germanica", "strain": "strain=FIT28", "accession": "GCA_019614655.1", "taxid": 2815720, "species_taxid": 2815720, "relation_to_type": "type", "validated": true, "ani": 82.7505, "matched_fragments": 1225, "total_fragments": 1971, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas brassicae", "strain": "strain=MAFF 212427", "accession": "GCA_010671725.1", "taxid": 2708063, "species_taxid": 2708063, "relation_to_type": "type", "validated": true, "ani": 81.7869, "matched_fragments": 776, "total_fragments": 1971, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001269775.1", "gtdb_species": 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86.8612, "matched_fragments": 1521, "total_fragments": 1971, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.32", "min_intra_species_ani": "95.56", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.87", "num_clustered_genomes": 3, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.248, "cell_length": 0.186, "doubling_h": -0.025, "growth_tmp": 28.767, "optimum_tmp": 27.972, "optimum_ph": 7.258, "genome_size": 5663774.24, "gc_content": 60.938, "coding_genes": 5204.79, "rRNA16S_genes": 5.319, "tRNA_genes": 67.35, "gram_stain": 0.0, "sporulation": 0.013, "motility": 0.975, "range_salinity": 0.666, "facultative_respiration": 0.021, "anaerobic_respiration": 0.0, "aerobic_respiration": 0.978, "mesophilic_range_tmp": 0.926, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.073, "bacillus_cell_shape": 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