{ "type": "genome", "identifier": "GCF_021272385.1", "organism": "Vibrio salinus", "title": "Vibrio salinus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Food Industry Research and Development Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_021272385.1", "bioproject": "PRJNA224116", "biosample": "SAMN23555486", "wgs_master": "JAJSDZ000000000.1", "refseq_category": "reference genome", "taxid": "2899784", "species_taxid": "2899784", "organism_name": "Vibrio salinus", "infraspecific_name": "strain=DNF-1", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/12/22", "asm_name": "ASM2127238v1", "asm_submitter": "Food Industry Research and Development Institute", "gbrs_paired_asm": "GCA_021272385.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/021/272/385/GCF_021272385.1_ASM2127238v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4461573", "genome_size_ungapped": "4461573", "gc_percent": "42.000000", "replicon_count": "0", "scaffold_count": "10", "contig_count": "10", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_021272385.1-RS_2024_08_31", "annotation_date": "2024-08-31", "total_gene_count": "4210", "protein_coding_gene_count": "3967", "non_coding_gene_count": "175", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-12-22", "dateModified": "2021-12-22", "datePublished": "2021-12-22", "_annotation": { "sample_count": 1, "sample_organism": [ "Vibrio salinus" ], "sample_taxid": [ "2899784" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.253 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4461573", "Number of Sequences": "10", "Longest Sequences (bp)": "1621662", "N50 (bp)": "1209233", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "42.2", "Number of CDSs": "4033", "Average Protein Length": "315.7", "Coding Ratio (%)": "85.6", "Number of rRNAs": "52", "Number of tRNAs": "113", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Vibrio salinus", "strain": "strain=DNF-1", "accession": "GCA_021272385.1", "taxid": 2899784, "species_taxid": 2899784, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1480, "total_fragments": 1484, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Photobacterium sanguinicancri", "strain": "strain=CECT 7579", "accession": "GCA_024346675.1", "taxid": 875932, "species_taxid": 875932, "relation_to_type": "type", "validated": true, "ani": 81.0966, "matched_fragments": 94, "total_fragments": 1484, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio hippocampi", "strain": "strain=CECT 8226", "accession": "GCA_921292975.1", "taxid": 654686, "species_taxid": 654686, "relation_to_type": "type", "validated": true, "ani": 80.3895, "matched_fragments": 135, "total_fragments": 1484, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio cortegadensis", "strain": "strain=CECT 7227", "accession": "GCA_024347395.1", "taxid": 1328770, "species_taxid": 1328770, "relation_to_type": "type", "validated": true, "ani": 80.1888, "matched_fragments": 143, "total_fragments": 1484, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio viridaestus", "strain": "strain=LJC006", "accession": "GCA_003856525.1", "taxid": 2487322, "species_taxid": 2487322, "relation_to_type": "type", "validated": true, "ani": 79.8748, "matched_fragments": 416, "total_fragments": 1484, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio palustris", "strain": "strain=CECT 9027", "accession": "GCA_024346995.1", "taxid": 1918946, "species_taxid": 1918946, "relation_to_type": "type", "validated": true, "ani": 79.7889, "matched_fragments": 143, "total_fragments": 1484, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio porteresiae", "strain": "strain=MSSRF30", "accession": "GCA_024347055.1", "taxid": 435912, "species_taxid": 435912, "relation_to_type": "type", "validated": true, "ani": 79.7487, "matched_fragments": 185, "total_fragments": 1484, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio algivorus", "strain": "strain=SA2", "accession": "GCA_002218005.2", "taxid": 1667024, "species_taxid": 1667024, "relation_to_type": "type", "validated": true, "ani": 79.6609, "matched_fragments": 131, "total_fragments": 1484, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio metschnikovii", "strain": "strain=NCTC8443", "accession": "GCA_900460295.1", "taxid": 28172, "species_taxid": 28172, "relation_to_type": "type", "validated": true, "ani": 79.6021, "matched_fragments": 164, "total_fragments": 1484, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio nitrifigilis", "strain": "strain=NFV-1", "accession": "GCA_015686695.1", "taxid": 2789781, "species_taxid": 2789781, "relation_to_type": "type", "validated": true, "ani": 79.5111, "matched_fragments": 212, "total_fragments": 1484, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio coralliilyticus", "strain": "strain=ATCC BAA-450", "accession": "GCA_000176135.1", "taxid": 190893, "species_taxid": 190893, 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"matched_fragments": 221, "total_fragments": 1484, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio thalassae", "strain": "strain=CECT8203", "accession": "GCA_900089835.1", "taxid": 1243014, "species_taxid": 1243014, "relation_to_type": "type", "validated": true, "ani": 78.6848, "matched_fragments": 128, "total_fragments": 1484, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio aestuarianus subsp. cardii", "strain": "strain=12/122 3T3", "accession": "GCA_011090275.1", "taxid": 2807650, "species_taxid": 28171, "relation_to_type": "type", "validated": true, "ani": 78.5357, "matched_fragments": 166, "total_fragments": 1484, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio diazotrophicus", "strain": "strain=NBRC 103148", "accession": "GCA_000740015.1", "taxid": 685, "species_taxid": 685, "relation_to_type": "type", "validated": true, "ani": 78.4929, "matched_fragments": 164, "total_fragments": 1484, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio albus", "strain": "strain=E4404", "accession": "GCA_003144035.1", "taxid": 2200953, "species_taxid": 2200953, "relation_to_type": "type", "validated": true, "ani": 78.4567, "matched_fragments": 167, "total_fragments": 1484, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio palustris", "strain": "strain=CECT 9027", "accession": "GCA_900162645.1", "taxid": 1918946, "species_taxid": 1918946, "relation_to_type": "type", "validated": true, "ani": 78.3929, "matched_fragments": 129, "total_fragments": 1484, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio quintilis", "strain": "", "accession": "GCA_900143745.1", "taxid": 1117707, "species_taxid": 1117707, "relation_to_type": "type", "validated": true, "ani": 78.3651, "matched_fragments": 210, "total_fragments": 1484, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio marinisediminis", "strain": "strain=404", "accession": "GCA_014050145.1", "taxid": 2758441, "species_taxid": 2758441, "relation_to_type": "type", "validated": true, "ani": 78.1661, "matched_fragments": 138, "total_fragments": 1484, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio ruber", "strain": "strain=CECT 7878", "accession": "GCA_900163965.1", "taxid": 184755, "species_taxid": 184755, "relation_to_type": "type", "validated": true, "ani": 77.9941, "matched_fragments": 202, "total_fragments": 1484, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio rhizosphaerae", "strain": "strain=DSM 18581", "accession": "GCA_000711805.1", "taxid": 398736, "species_taxid": 398736, "relation_to_type": "type", "validated": true, "ani": 77.9526, "matched_fragments": 212, "total_fragments": 1484, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Photobacterium sanguinicancri", "strain": "strain=CAIM 1827", "accession": 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