{ "type": "genome", "identifier": "GCF_021278965.1", "organism": "Chryseobacterium capnotolerans", "title": "Chryseobacterium capnotolerans", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Bonn", "publication": [ {} ], "properties": { "assembly_accession": "GCF_021278965.1", "bioproject": "PRJNA224116", "biosample": "SAMN15667277", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2759528", "species_taxid": "2759528", "organism_name": "Chryseobacterium capnotolerans", "infraspecific_name": "na", "isolate": "DH-B6", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/12/23", "asm_name": "ASM2127896v1", "asm_submitter": "University of Bonn", "gbrs_paired_asm": "GCA_021278965.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/021/278/965/GCF_021278965.1_ASM2127896v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5357258", "genome_size_ungapped": "5357258", "gc_percent": "35.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_021278965.1-RS_2024_05_21", "annotation_date": "2024-05-21", "total_gene_count": "5146", "protein_coding_gene_count": "4750", "non_coding_gene_count": "124", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-12-23", "dateModified": "2021-12-23", "datePublished": "2021-12-23", "_annotation": { "sample_count": 1, "sample_organism": [ "Chryseobacterium capnotolerans" ], "sample_taxid": [ "2759528" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Germany: in the city of Bonn" ], "sample_host_location_id": [], "data_size": "1.490 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": 10.0, "max": 10.0 }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5357258", "Number of Sequences": "1", "Longest Sequences (bp)": "5357258", "N50 (bp)": "5357258", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "35.5", "Number of CDSs": "5115", "Average Protein Length": "296.3", "Coding Ratio (%)": "84.9", "Number of rRNAs": "21", "Number of tRNAs": "98", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Chryseobacterium nakagawai", "strain": "strain=NCTC13529", "accession": "GCA_900637665.1", "taxid": 1241982, "species_taxid": 1241982, "relation_to_type": "type", "validated": true, "ani": 87.7467, "matched_fragments": 1403, "total_fragments": 1785, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium contaminans", "strain": "strain=C-26", "accession": "GCA_001684955.1", "taxid": 1423959, "species_taxid": 1423959, "relation_to_type": "type", "validated": true, "ani": 87.4393, "matched_fragments": 1167, "total_fragments": 1785, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium jejuense", "strain": "strain=DSM 19299", "accession": "GCA_900100075.1", "taxid": 445960, "species_taxid": 445960, "relation_to_type": "type", "validated": true, "ani": 87.3862, "matched_fragments": 1422, "total_fragments": 1785, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium contaminans", "strain": "strain=DSM 27621", "accession": "GCA_900142615.1", "taxid": 1423959, "species_taxid": 1423959, "relation_to_type": "type", "validated": true, "ani": 87.3017, "matched_fragments": 1304, "total_fragments": 1785, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium pennae", "strain": "strain=1_F178", "accession": "GCA_003385515.1", "taxid": 2258962, "species_taxid": 2258962, "relation_to_type": "type", "validated": true, "ani": 86.9019, "matched_fragments": 1366, "total_fragments": 1785, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium ureilyticum", "strain": "strain=DSM 18017", "accession": "GCA_900156735.1", "taxid": 373668, "species_taxid": 373668, "relation_to_type": "type", "validated": true, "ani": 84.688, "matched_fragments": 1193, "total_fragments": 1785, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium artocarpi", "strain": "strain=UTM-3", "accession": "GCA_001684975.1", "taxid": 1414727, "species_taxid": 1414727, "relation_to_type": "type", "validated": true, "ani": 84.4583, "matched_fragments": 1161, "total_fragments": 1785, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium arthrosphaerae", "strain": "strain=CC-VM-7", "accession": "GCA_001684965.1", "taxid": 651561, "species_taxid": 651561, "relation_to_type": "type", "validated": true, "ani": 83.0654, "matched_fragments": 1122, "total_fragments": 1785, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium ginsenosidimutans", "strain": "strain=THG 15", "accession": "GCA_024807225.1", "taxid": 687846, "species_taxid": 687846, "relation_to_type": "type", "validated": true, "ani": 80.2801, "matched_fragments": 739, "total_fragments": 1785, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900078205.2", "gtdb_species": "s__Chryseobacterium timonianum", "ani": 99.9678, "matched_fragments": 1763, "total_fragments": 1785, "gtdb_taxonomy": 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