{ "type": "genome", "identifier": "GCF_021295315.1", "organism": "Motilimonas cestriensis", "title": "Motilimonas cestriensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Hohai University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_021295315.1", "bioproject": "PRJNA224116", "biosample": "SAMN20892913", "wgs_master": "JAIMJA000000000.1", "refseq_category": "reference genome", "taxid": "2742685", "species_taxid": "2742685", "organism_name": "Motilimonas cestriensis", "infraspecific_name": "strain=MKS20", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/12/27", "asm_name": "ASM2129531v1", "asm_submitter": "Hohai University", "gbrs_paired_asm": "GCA_021295315.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/021/295/315/GCF_021295315.1_ASM2129531v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4771568", "genome_size_ungapped": "4770876", "gc_percent": "44.000000", "replicon_count": "0", "scaffold_count": "89", "contig_count": "89", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_021295315.1-RS_2024_05_13", "annotation_date": "2024-05-13", "total_gene_count": "4422", "protein_coding_gene_count": "4251", "non_coding_gene_count": "109", "pubmed_id": "34921716" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-12-27", "dateModified": "2021-12-27", "datePublished": "2021-12-27", "_annotation": { "sample_count": 1, "sample_organism": [ "Motilimonas cestriensis" ], "sample_taxid": [ "2742685" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "United Kingdom: Cheshire Salt District, Anderton Brine Spring System" ], "sample_host_location_id": [], "data_size": "1.362 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4771568", "Number of Sequences": "89", "Longest Sequences (bp)": "370150", "N50 (bp)": "170736", "Gap Ratio (%)": "0.014503", "GCcontent (%)": "44.1", "Number of CDSs": "4274", "Average Protein Length": "320.3", "Coding Ratio (%)": "86.1", "Number of rRNAs": "2", "Number of tRNAs": "87", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Motilimonas cestriensis", "strain": "strain=MKS20", "accession": "GCA_021295315.1", "taxid": 2742685, "species_taxid": 2742685, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1547, "total_fragments": 1550, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Motilimonas eburnea", "strain": "strain=YH6", "accession": "GCA_021295345.1", "taxid": 1737488, "species_taxid": 1737488, "relation_to_type": "type", "validated": true, "ani": 79.9867, "matched_fragments": 564, "total_fragments": 1550, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Motilimonas pumila", "strain": "strain=PLHSC7-2", "accession": "GCA_003596335.1", "taxid": 2303987, "species_taxid": 2303987, "relation_to_type": "type", "validated": true, "ani": 79.0481, "matched_fragments": 251, "total_fragments": 1550, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoalteromonas issachenkonii", "strain": "strain=KMM 3549", "accession": "GCA_002310795.1", "taxid": 152297, "species_taxid": 152297, "relation_to_type": "suspected-type", "validated": true, "ani": 77.2887, "matched_fragments": 64, "total_fragments": 1550, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoalteromonas tetraodonis", "strain": "strain=GFC", "accession": "GCA_002310835.1", "taxid": 43659, "species_taxid": 43659, "relation_to_type": "suspected-type", "validated": true, "ani": 77.0697, "matched_fragments": 59, "total_fragments": 1550, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Psychromonas aquimarina", "strain": "strain=ATCC BAA-1526", "accession": "GCA_000428725.1", "taxid": 444919, "species_taxid": 444919, "relation_to_type": "type", "validated": true, "ani": 77.0626, "matched_fragments": 72, "total_fragments": 1550, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoalteromonas undina", "strain": "strain=DSM 6065", "accession": "GCA_000238275.4", "taxid": 43660, "species_taxid": 43660, "relation_to_type": "type", "validated": true, "ani": 76.8887, "matched_fragments": 65, "total_fragments": 1550, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterovibrio baiacu", "strain": "strain=A649", "accession": "GCA_014863865.1", "taxid": 2491023, "species_taxid": 2491023, "relation_to_type": "type", "validated": true, "ani": 76.8016, "matched_fragments": 55, "total_fragments": 1550, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterovibrio baiacu", "strain": "strain=A649", "accession": "GCA_004120195.1", "taxid": 2491023, "species_taxid": 2491023, "relation_to_type": "type", "validated": true, "ani": 76.8016, "matched_fragments": 55, "total_fragments": 1550, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoalteromonas tetraodonis", "strain": "strain=NBRC 103034", "accession": "GCA_007991235.1", "taxid": 43659, "species_taxid": 43659, "relation_to_type": "suspected-type", "validated": true, "ani": 76.7811, "matched_fragments": 52, "total_fragments": 1550, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella intestini", "strain": "strain=MCCC 1A01895", "accession": "GCA_018221465.1", "taxid": 2017544, "species_taxid": 2017544, "relation_to_type": "type", "validated": true, "ani": 76.7516, "matched_fragments": 57, "total_fragments": 1550, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella schlegeliana", "strain": "strain=LMG 21406", "accession": "GCA_023283605.1", "taxid": 190308, "species_taxid": 190308, "relation_to_type": "type", "validated": true, "ani": 76.7431, "matched_fragments": 52, "total_fragments": 1550, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Photobacterium swingsii", "strain": "strain=CAIM 1393", "accession": "GCA_001077885.1", "taxid": 680026, "species_taxid": 680026, "relation_to_type": "type", "validated": true, "ani": 76.6376, "matched_fragments": 75, "total_fragments": 1550, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Photobacterium indicum", "strain": "strain=ATCC 19614", "accession": "GCA_003026215.1", "taxid": 81447, "species_taxid": 81447, "relation_to_type": "type", "validated": true, "ani": 76.6338, "matched_fragments": 71, "total_fragments": 1550, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella psychromarinicola", "strain": "strain=M2", "accession": "GCA_003855155.1", "taxid": 2487742, "species_taxid": 2487742, "relation_to_type": "type", "validated": true, "ani": 76.62, "matched_fragments": 55, "total_fragments": 1550, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella psychromarinicola", "strain": "strain=JCM 32090", "accession": "GCA_023283865.1", "taxid": 2487742, "species_taxid": 2487742, "relation_to_type": "type", "validated": true, "ani": 76.5684, "matched_fragments": 53, "total_fragments": 1550, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella marinintestina", "strain": "strain=LMG 21403", "accession": "GCA_023283845.1", "taxid": 190305, "species_taxid": 190305, "relation_to_type": "type", "validated": true, "ani": 76.4812, "matched_fragments": 65, "total_fragments": 1550, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Photobacterium frigidiphilum", "strain": "strain=JCM 12947", "accession": "GCA_003025615.1", "taxid": 264736, "species_taxid": 264736, "relation_to_type": "type", "validated": true, "ani": 76.3528, "matched_fragments": 78, "total_fragments": 1550, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Grimontia marina", "strain": "strain=CECT 8713", "accession": "GCA_900060185.1", "taxid": 646534, "species_taxid": 646534, "relation_to_type": "type", "validated": true, "ani": 76.2996, "matched_fragments": 51, "total_fragments": 1550, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella aestuarii", "strain": "strain=JCM 17801", "accession": "GCA_023283685.1", "taxid": 1028752, "species_taxid": 1028752, "relation_to_type": "type", "validated": true, "ani": 76.1969, "matched_fragments": 65, "total_fragments": 1550, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003596335.1", "gtdb_species": "s__Motilimonas pumila", "ani": 79.0321, "matched_fragments": 252, "total_fragments": 1550, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Psychromonadaceae;g__Motilimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004378355.1", "gtdb_species": "s__Psychromonas sp004378355", "ani": 77.4407, "matched_fragments": 77, "total_fragments": 1550, "gtdb_taxonomy": 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"d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Psychromonadaceae;g__Psychromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001676025.1", "gtdb_species": "s__Vibrio sp001676025", "ani": 77.1863, "matched_fragments": 57, "total_fragments": 1550, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000428725.1", "gtdb_species": "s__Psychromonas aquimarina", "ani": 77.0608, "matched_fragments": 72, "total_fragments": 1550, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Psychromonadaceae;g__Psychromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002310835.1", "gtdb_species": "s__Pseudoalteromonas tetraodonis", "ani": 76.953, "matched_fragments": 62, "total_fragments": 1550, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Pseudoalteromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.76", "min_intra_species_ani": "96.28", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.84", "num_clustered_genomes": 28, "status": "-" }, { "accession": "GCF_000238275.3", "gtdb_species": "s__Pseudoalteromonas undina", "ani": 76.8258, "matched_fragments": 67, "total_fragments": 1550, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Pseudoalteromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.26", "min_intra_species_ani": "96.09", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.86", "num_clustered_genomes": 14, "status": "-" }, { "accession": "GCF_018221465.1", "gtdb_species": "s__Shewanella intestini", "ani": 76.8109, "matched_fragments": 60, "total_fragments": 1550, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Shewanellaceae;g__Shewanella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_002221505.1", "gtdb_species": "s__Pseudoalteromonas nigrifaciens", "ani": 76.7999, "matched_fragments": 64, "total_fragments": 1550, "gtdb_taxonomy": 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"d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Shewanellaceae;g__Shewanella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.14", "min_intra_species_ani": "98.29", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.92", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_001077885.1", "gtdb_species": "s__Photobacterium swingsii", "ani": 76.6173, "matched_fragments": 76, "total_fragments": 1550, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Photobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.98", "min_intra_species_ani": "99.98", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_007988745.1", "gtdb_species": "s__Pseudoalteromonas atlantica", "ani": 76.5638, "matched_fragments": 62, "total_fragments": 1550, "gtdb_taxonomy": 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