{ "type": "genome", "identifier": "GCF_021311115.1", "organism": "Chryseobacterium gwangjuense", "title": "Chryseobacterium gwangjuense", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Dongguk University, Biomedi Campus", "publication": [ {} ], "properties": { "assembly_accession": "GCF_021311115.1", "bioproject": "PRJNA224116", "biosample": "SAMN24146880", "wgs_master": "JAJTNP000000000.1", "refseq_category": "reference genome", "taxid": "1069980", "species_taxid": "1069980", "organism_name": "Chryseobacterium gwangjuense", "infraspecific_name": "strain=THG-A18", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/12/28", "asm_name": "ASM2131111v1", "asm_submitter": "Dongguk University, Biomedi Campus", "gbrs_paired_asm": "GCA_021311115.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/021/311/115/GCF_021311115.1_ASM2131111v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3493790", "genome_size_ungapped": "3493690", "gc_percent": "34.500000", "replicon_count": "0", "scaffold_count": "14", "contig_count": "14", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_021311115.1-RS_2024_10_25", "annotation_date": "2024-10-25", "total_gene_count": "3220", "protein_coding_gene_count": "3148", "non_coding_gene_count": "62", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-12-28", "dateModified": "2021-12-28", "datePublished": "2021-12-28", "_annotation": { "sample_count": 1, "sample_organism": [ "Chryseobacterium gwangjuense" ], "sample_taxid": [ "1069980" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "0.972 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3493790", "Number of Sequences": "14", "Longest Sequences (bp)": "743442", "N50 (bp)": "465482", "Gap Ratio (%)": "0.002862", "GCcontent (%)": "34.4", "Number of CDSs": "3132", "Average Protein Length": "330.1", "Coding Ratio (%)": "88.8", "Number of rRNAs": "3", "Number of tRNAs": "57", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Chryseobacterium gwangjuense", "strain": "strain=THG-A18", "accession": "GCA_021311115.1", "taxid": 1069980, "species_taxid": 1069980, 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734, "total_fragments": 1158, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium taeanense", "strain": "strain=DSM 17071", "accession": "GCA_900099685.1", "taxid": 311334, "species_taxid": 311334, "relation_to_type": "type", "validated": true, "ani": 80.9329, "matched_fragments": 647, "total_fragments": 1158, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium ureilyticum", "strain": "strain=DSM 18017", "accession": "GCA_900156735.1", "taxid": 373668, "species_taxid": 373668, "relation_to_type": "type", "validated": true, "ani": 80.8599, "matched_fragments": 713, "total_fragments": 1158, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium jejuense", "strain": "strain=DSM 19299", "accession": "GCA_900100075.1", "taxid": 445960, "species_taxid": 445960, "relation_to_type": "type", "validated": true, "ani": 80.7744, "matched_fragments": 685, "total_fragments": 1158, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium schmidteae", "strain": "strain=Marseille-P9602", "accession": "GCA_903166575.1", "taxid": 2730404, "species_taxid": 2730404, "relation_to_type": "type", "validated": true, "ani": 80.6284, "matched_fragments": 695, "total_fragments": 1158, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium oleae", "strain": "strain=DSM 25575", "accession": "GCA_900115055.1", "taxid": 491207, "species_taxid": 491207, "relation_to_type": "type", "validated": true, "ani": 80.5535, "matched_fragments": 649, "total_fragments": 1158, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium pennae", "strain": "strain=1_F178", "accession": "GCA_003385515.1", "taxid": 2258962, "species_taxid": 2258962, "relation_to_type": "type", "validated": true, "ani": 80.4328, "matched_fragments": 689, "total_fragments": 1158, "ani_threshold": 95, "status": 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