{ "type": "genome", "identifier": "GCF_021390435.2", "organism": "Kibdelosporangium philippinense", "title": "Kibdelosporangium philippinense", "description": "na", "data type": "Genome sequencing and assembly", "organization": "MacLea Laboratory", "publication": [ {} ], "properties": { "assembly_accession": "GCF_021390435.2", "bioproject": "PRJNA224116", "biosample": "SAMN24220436", "wgs_master": "JAJVCN000000000.1", "refseq_category": "reference genome", "taxid": "211113", "species_taxid": "211113", "organism_name": "Kibdelosporangium philippinense", "infraspecific_name": "strain=ATCC 49844", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Minor", "genome_rep": "Full", "seq_rel_date": "2022/01/08", "asm_name": "ASM2139043v3", "asm_submitter": "MacLea Laboratory", "gbrs_paired_asm": "GCA_021390435.3", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/021/390/435/GCF_021390435.2_ASM2139043v3", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "12047807", "genome_size_ungapped": "12047807", "gc_percent": "65.000000", "replicon_count": "0", "scaffold_count": "8", "contig_count": "8", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_021390435.2-RS_2024_08_29", "annotation_date": "2024-08-29", "total_gene_count": "11428", "protein_coding_gene_count": "11062", "non_coding_gene_count": "79", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-01-08", "dateModified": "2022-01-08", "datePublished": "2022-01-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Kibdelosporangium philippinense" ], "sample_taxid": [ "211113" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Philippines" ], "sample_host_location_id": [], "data_size": "3.329 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 15.28, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "12047807", "Number of Sequences": "8", "Longest Sequences (bp)": "4055460", "N50 (bp)": "2839569", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "65.1", "Number of CDSs": "11367", "Average Protein Length": "317.4", "Coding Ratio (%)": "89.8", "Number of rRNAs": "9", "Number of tRNAs": "78", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Kibdelosporangium philippinense", "strain": "strain=ATCC 49844", "accession": "GCA_021390435.3", "taxid": 211113, "species_taxid": 211113, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 4008, "total_fragments": 4012, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Kibdelosporangium aridum", "strain": "strain=DSM 43828", "accession": "GCA_900176515.1", "taxid": 2030, "species_taxid": 2030, "relation_to_type": "type", "validated": true, "ani": 87.0491, "matched_fragments": 2625, "total_fragments": 4012, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kibdelosporangium persicum", "strain": "strain=4NS15", "accession": "GCA_013280595.1", "taxid": 2698649, "species_taxid": 2698649, "relation_to_type": "type", "validated": true, "ani": 84.484, "matched_fragments": 2019, "total_fragments": 4012, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kibdelosporangium phytohabitans", "strain": "strain=KLBMP1111", "accession": "GCA_001302585.1", "taxid": 860235, "species_taxid": 860235, "relation_to_type": "type", "validated": true, "ani": 83.4753, "matched_fragments": 1997, "total_fragments": 4012, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kibdelosporangium banguiense", "strain": "strain=DSM 46670", "accession": "GCA_017876405.1", "taxid": 1365924, "species_taxid": 1365924, "relation_to_type": "type", "validated": true, "ani": 81.8098, "matched_fragments": 1874, "total_fragments": 4012, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinokineospora globicatena", "strain": "strain=DSM 44256", "accession": "GCA_024171945.1", "taxid": 103729, "species_taxid": 103729, "relation_to_type": "type", "validated": true, "ani": 78.1747, "matched_fragments": 717, "total_fragments": 4012, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinokineospora diospyrosa", "strain": "strain=DSM 44255", "accession": "GCA_024171925.1", "taxid": 103728, "species_taxid": 103728, "relation_to_type": "type", "validated": true, "ani": 78.0562, "matched_fragments": 721, "total_fragments": 4012, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lentzea flava", "strain": "strain=DSM 43885", "accession": "GCA_024171845.1", "taxid": 103732, "species_taxid": 103732, "relation_to_type": "type", "validated": true, "ani": 77.9863, "matched_fragments": 845, "total_fragments": 4012, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharothrix obliqua", "strain": "strain=SC076", "accession": "GCA_019375475.1", "taxid": 2861747, "species_taxid": 2861747, "relation_to_type": "type", "validated": true, "ani": 77.5804, "matched_fragments": 726, "total_fragments": 4012, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium vaccae", "strain": "strain=95051", "accession": "GCA_001655245.1", "taxid": 1810, "species_taxid": 1810, "relation_to_type": "type", "validated": true, "ani": 76.4525, "matched_fragments": 341, "total_fragments": 4012, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium vaccae", "strain": "strain=NBRC 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"vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Kibdelosporangium", "philippinense" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }