{
    "type": "genome",
    "identifier": "GCF_021390575.1",
    "organism": "Paraburkholderia adhaesiva",
    "title": "Paraburkholderia adhaesiva",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Sun Yat-sen University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_021390575.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN22187325",
        "wgs_master": "JAJEJQ000000000.1",
        "refseq_category": "reference genome",
        "taxid": "2883244",
        "species_taxid": "2883244",
        "organism_name": "Paraburkholderia adhaesiva",
        "infraspecific_name": "strain=ZD32-2",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/01/08",
        "asm_name": "ASM2139057v1",
        "asm_submitter": "Sun Yat-sen University",
        "gbrs_paired_asm": "GCA_021390575.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/021/390/575/GCF_021390575.1_ASM2139057v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "6974420",
        "genome_size_ungapped": "6974420",
        "gc_percent": "62.500000",
        "replicon_count": "0",
        "scaffold_count": "5",
        "contig_count": "5",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_021390575.1-RS_2024_09_02",
        "annotation_date": "2024-09-02",
        "total_gene_count": "6325",
        "protein_coding_gene_count": "6126",
        "non_coding_gene_count": "82",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-01-08",
    "dateModified": "2022-01-08",
    "datePublished": "2022-01-08",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Paraburkholderia adhaesiva"
        ],
        "sample_taxid": [
            "2883244"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China: Guangzhou"
        ],
        "sample_host_location_id": [],
        "data_size": "1.920 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.93,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "6974420",
        "Number of Sequences": "5",
        "Longest Sequences (bp)": "3377436",
        "N50 (bp)": "1911405",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "62.6",
        "Number of CDSs": "6311",
        "Average Protein Length": "312.1",
        "Coding Ratio (%)": "84.7",
        "Number of rRNAs": "10",
        "Number of tRNAs": "65",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Paraburkholderia dinghuensis",
                "strain": "strain=DHOA04",
                "accession": "GCA_003837865.1",
                "taxid": 2305225,
                "species_taxid": 2305225,
                "relation_to_type": "type",
                "validated": true,
                "ani": 93.4315,
                "matched_fragments": 1655,
                "total_fragments": 2322,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paraburkholderia acidipaludis",
                "strain": "strain=NBRC 101816",
                "accession": "GCA_000684975.1",
                "taxid": 660537,
                "species_taxid": 660537,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.5813,
                "matched_fragments": 1145,
                "total_fragments": 2322,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paraburkholderia ferrariae",
                "strain": "strain=NBRC 106233",
                "accession": "GCA_000685035.1",
                "taxid": 386056,
                "species_taxid": 386056,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.5167,
                "matched_fragments": 1177,
                "total_fragments": 2322,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paraburkholderia lycopersici",
                "strain": "strain=TNe-862",
                "accession": "GCA_900096975.1",
                "taxid": 416944,
                "species_taxid": 416944,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.8602,
                "matched_fragments": 1167,
                "total_fragments": 2322,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paraburkholderia tropica",
                "strain": "strain=Ppe8",
                "accession": "GCA_002071575.1",
                "taxid": 92647,
                "species_taxid": 92647,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.7379,
                "matched_fragments": 1242,
                "total_fragments": 2322,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paraburkholderia heleia",
                "strain": "strain=NBRC 101817",
                "accession": "GCA_000739775.1",
                "taxid": 634127,
                "species_taxid": 634127,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.7051,
                "matched_fragments": 1190,
                "total_fragments": 2322,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paraburkholderia pallida",
                "strain": "strain=7MH5",
                "accession": "GCA_004524855.1",
                "taxid": 2547399,
                "species_taxid": 2547399,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.7001,
                "matched_fragments": 1227,
                "total_fragments": 2322,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paraburkholderia oxyphila",
                "strain": "strain=NBRC 105797",
                "accession": "GCA_000685075.1",
                "taxid": 614212,
                "species_taxid": 614212,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.6871,
                "matched_fragments": 1192,
                "total_fragments": 2322,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paraburkholderia nodosa",
                "strain": "strain=DSM 21604",
                "accession": "GCA_000519185.1",
                "taxid": 392320,
                "species_taxid": 392320,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.6322,
                "matched_fragments": 1265,
                "total_fragments": 2322,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paraburkholderia tropica",
                "strain": "strain=LMG 22274",
                "accession": "GCA_902833865.1",
                "taxid": 92647,
                "species_taxid": 92647,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.6139,
                "matched_fragments": 1228,
                "total_fragments": 2322,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paraburkholderia mimosarum",
                "strain": "strain=NBRC 106338",
                "accession": "GCA_000739815.1",
                "taxid": 312026,
                "species_taxid": 312026,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.6106,
                "matched_fragments": 1159,
                "total_fragments": 2322,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paraburkholderia silviterrae",
                "strain": "strain=4M-K11",
                "accession": "GCA_004353915.1",
                "taxid": 2528715,
                "species_taxid": 2528715,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.6019,
                "matched_fragments": 1196,
                "total_fragments": 2322,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paraburkholderia tropica",
                "strain": "strain=LMG 22274",
                "accession": "GCA_900109265.1",
                "taxid": 92647,
                "species_taxid": 92647,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.5943,
                "matched_fragments": 1221,
                "total_fragments": 2322,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paraburkholderia mimosarum",
                "strain": "strain=LMG 23256",
                "accession": "GCA_902833725.1",
                "taxid": 312026,
                "species_taxid": 312026,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.5884,
                "matched_fragments": 1200,
                "total_fragments": 2322,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paraburkholderia sacchari",
                "strain": "strain=LMG 19450",
                "accession": "GCA_902833715.1",
                "taxid": 159450,
                "species_taxid": 159450,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.5291,
                "matched_fragments": 1158,
                "total_fragments": 2322,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paraburkholderia eburnea",
                "strain": "strain=JCM 18070",
                "accession": "GCA_002917095.1",
                "taxid": 1189126,
                "species_taxid": 1189126,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.4744,
                "matched_fragments": 1118,
                "total_fragments": 2322,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paraburkholderia mimosarum",
                "strain": "strain=LMG 23256",
                "accession": "GCA_000472825.1",
                "taxid": 312026,
                "species_taxid": 312026,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.4336,
                "matched_fragments": 1176,
                "total_fragments": 2322,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paraburkholderia podalyriae",
                "strain": "strain=WC7.3b",
                "accession": "GCA_014397785.1",
                "taxid": 1938811,
                "species_taxid": 1938811,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.2752,
                "matched_fragments": 960,
                "total_fragments": 2322,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paraburkholderia azotifigens",
                "strain": "strain=NF 2-5-3",
                "accession": "GCA_007995085.1",
                "taxid": 2057004,
                "species_taxid": 2057004,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.2701,
                "matched_fragments": 993,
                "total_fragments": 2322,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paraburkholderia saeva",
                "strain": "strain=LMG 31841",
                "accession": "GCA_907164555.1",
                "taxid": 2777537,
                "species_taxid": 2777537,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.9794,
                "matched_fragments": 862,
                "total_fragments": 2322,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.93,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_003837865.1",
                "gtdb_species": "s__Paraburkholderia dinghuensis",
                "ani": 93.4129,
                "matched_fragments": 1657,
                "total_fragments": 2322,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paraburkholderia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_004298475.1",
                "gtdb_species": "s__Paraburkholderia sp004298475",
                "ani": 86.1906,
                "matched_fragments": 1082,
                "total_fragments": 2322,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paraburkholderia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.94",
                "min_intra_species_ani": "99.94",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000684975.1",
                "gtdb_species": "s__Paraburkholderia acidipaludis",
                "ani": 84.5933,
                "matched_fragments": 1142,
                "total_fragments": 2322,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paraburkholderia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000685035.1",
                "gtdb_species": "s__Paraburkholderia ferrariae",
                "ani": 84.5332,
                "matched_fragments": 1175,
                "total_fragments": 2322,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paraburkholderia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900096975.1",
                "gtdb_species": "s__Paraburkholderia lycopersici",
                "ani": 83.874,
                "matched_fragments": 1165,
                "total_fragments": 2322,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paraburkholderia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003096715.1",
                "gtdb_species": "s__Paraburkholderia silvatlantica",
                "ani": 83.8165,
                "matched_fragments": 1167,
                "total_fragments": 2322,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paraburkholderia",
                "ani_circumscription_radius": 95.5542,
                "mean_intra_species_ani": "99.65",
                "min_intra_species_ani": "99.23",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCF_003268775.1",
                "gtdb_species": "s__Paraburkholderia unamae",
                "ani": 83.7634,
                "matched_fragments": 1230,
                "total_fragments": 2322,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paraburkholderia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.69",
                "min_intra_species_ani": "98.69",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000685075.1",
                "gtdb_species": "s__Paraburkholderia oxyphila",
                "ani": 83.7299,
                "matched_fragments": 1186,
                "total_fragments": 2322,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paraburkholderia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.32",
                "min_intra_species_ani": "95.32",
                "mean_intra_species_af": "0.74",
                "min_intra_species_af": "0.74",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_004353905.1",
                "gtdb_species": "s__Paraburkholderia guartelaensis",
                "ani": 83.7166,
                "matched_fragments": 1254,
                "total_fragments": 2322,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paraburkholderia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000739775.1",
                "gtdb_species": "s__Paraburkholderia heleia",
                "ani": 83.7158,
                "matched_fragments": 1188,
                "total_fragments": 2322,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paraburkholderia",
                "ani_circumscription_radius": 95.5542,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000519185.1",
                "gtdb_species": "s__Paraburkholderia nodosa",
                "ani": 83.6468,
                "matched_fragments": 1263,
                "total_fragments": 2322,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paraburkholderia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000739815.1",
                "gtdb_species": "s__Paraburkholderia mimosarum",
                "ani": 83.6022,
                "matched_fragments": 1160,
                "total_fragments": 2322,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paraburkholderia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.63",
                "min_intra_species_ani": "98.93",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_900109265.1",
                "gtdb_species": "s__Paraburkholderia tropica",
                "ani": 83.5984,
                "matched_fragments": 1222,
                "total_fragments": 2322,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paraburkholderia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.07",
                "min_intra_species_ani": "95.97",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 14,
                "status": "-"
            },
            {
                "accession": "GCF_004353915.1",
                "gtdb_species": "s__Paraburkholderia sp004353915",
                "ani": 83.5578,
                "matched_fragments": 1201,
                "total_fragments": 2322,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paraburkholderia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002917095.1",
                "gtdb_species": "s__Paraburkholderia eburnea",
                "ani": 83.4556,
                "matched_fragments": 1120,
                "total_fragments": 2322,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paraburkholderia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.11",
                "min_intra_species_ani": "98.22",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 3,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.206,
        "cell_length": 0.138,
        "doubling_h": 0.0,
        "growth_tmp": 29.45,
        "optimum_tmp": 29.643,
        "optimum_ph": 6.11,
        "genome_size": 7672919.331,
        "gc_content": 62.985,
        "coding_genes": 7196.441,
        "rRNA16S_genes": 5.571,
        "tRNA_genes": 61.73,
        "gram_stain": 0.0,
        "sporulation": 0.035,
        "motility": 0.689,
        "range_salinity": 0.5,
        "facultative_respiration": 0.029,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 0.97,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.945,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.054,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Paraburkholderia",
        "adhaesiva"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}