{
    "type": "genome",
    "identifier": "GCF_021404465.1",
    "organism": "Billgrantia zhangzhouensis",
    "title": "Billgrantia zhangzhouensis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "The Third Institute of Oceanography, Ministry of Natural Resources of PR China",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_021404465.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN14838968",
        "wgs_master": "JABFTT000000000.1",
        "refseq_category": "reference genome",
        "taxid": "2733481",
        "species_taxid": "2733481",
        "organism_name": "Billgrantia zhangzhouensis",
        "infraspecific_name": "strain=MCCC 1A11036",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/01/10",
        "asm_name": "ASM2140446v1",
        "asm_submitter": "The Third Institute of Oceanography, Ministry of Natural Resources of PR China",
        "gbrs_paired_asm": "GCA_021404465.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/021/404/465/GCF_021404465.1_ASM2140446v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4413900",
        "genome_size_ungapped": "4413900",
        "gc_percent": "63.500000",
        "replicon_count": "0",
        "scaffold_count": "29",
        "contig_count": "29",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_021404465.1-RS_2024_03_29",
        "annotation_date": "2024-03-29",
        "total_gene_count": "4179",
        "protein_coding_gene_count": "4068",
        "non_coding_gene_count": "73",
        "pubmed_id": "33815342"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-01-10",
    "dateModified": "2022-01-10",
    "datePublished": "2022-01-10",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Billgrantia zhangzhouensis"
        ],
        "sample_taxid": [
            "2733481"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China:Zhangzhou City"
        ],
        "sample_host_location_id": [],
        "data_size": "1.234 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4413900",
        "Number of Sequences": "29",
        "Longest Sequences (bp)": "410080",
        "N50 (bp)": "244799",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "63.3",
        "Number of CDSs": "4092",
        "Average Protein Length": "321.6",
        "Coding Ratio (%)": "89.4",
        "Number of rRNAs": "2",
        "Number of tRNAs": "64",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Halomonas zhangzhouensis",
                "strain": "strain=MCCC 1A11036",
                "accession": "GCA_021404465.1",
                "taxid": 2733481,
                "species_taxid": 2733481,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1452,
                "total_fragments": 1454,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Halomonas tianxiuensis",
                "strain": "strain=BC-M4-5",
                "accession": "GCA_009834345.1",
                "taxid": 2497861,
                "species_taxid": 2497861,
                "relation_to_type": "type",
                "validated": true,
                "ani": 93.5272,
                "matched_fragments": 1198,
                "total_fragments": 1454,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halomonas sulfidoxydans",
                "strain": "strain=MCCC 1A11059",
                "accession": "GCA_017868775.1",
                "taxid": 2733484,
                "species_taxid": 2733484,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.606,
                "matched_fragments": 1066,
                "total_fragments": 1454,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halomonas lactosivorans",
                "strain": "strain=KCTC 52281",
                "accession": "GCA_003254665.1",
                "taxid": 2185141,
                "species_taxid": 2185141,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.3154,
                "matched_fragments": 1031,
                "total_fragments": 1454,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halomonas aerodenitrificans",
                "strain": "strain=MCCC 1A11058",
                "accession": "GCA_021404405.1",
                "taxid": 2733483,
                "species_taxid": 2733483,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.0928,
                "matched_fragments": 1108,
                "total_fragments": 1454,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halomonas sulfidivorans",
                "strain": "strain=MCCC 1A13718",
                "accession": "GCA_017868935.1",
                "taxid": 2733488,
                "species_taxid": 2733488,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.0588,
                "matched_fragments": 1051,
                "total_fragments": 1454,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halomonas antri",
                "strain": "strain=Y3S6",
                "accession": "GCA_019430905.1",
                "taxid": 2846777,
                "species_taxid": 2846777,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.0563,
                "matched_fragments": 1035,
                "total_fragments": 1454,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halomonas ethanolica",
                "strain": "strain=MCCC 1A11081",
                "accession": "GCA_021404305.1",
                "taxid": 2733486,
                "species_taxid": 2733486,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.0342,
                "matched_fragments": 1051,
                "total_fragments": 1454,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halomonas bachuensis",
                "strain": "strain=DX6",
                "accession": "GCA_011742165.1",
                "taxid": 2717286,
                "species_taxid": 2717286,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.1573,
                "matched_fragments": 1075,
                "total_fragments": 1454,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halomonas kenyensis",
                "strain": "strain=DSM 17331",
                "accession": "GCA_022341445.1",
                "taxid": 321266,
                "species_taxid": 321266,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.7353,
                "matched_fragments": 977,
                "total_fragments": 1454,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halomonas kenyensis",
                "strain": "strain=DSM 17331",
                "accession": "GCA_013697085.1",
                "taxid": 321266,
                "species_taxid": 321266,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.6435,
                "matched_fragments": 985,
                "total_fragments": 1454,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_009834345.1",
                "gtdb_species": "s__Halomonas sp009834345",
                "ani": 93.5456,
                "matched_fragments": 1196,
                "total_fragments": 1454,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Halomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_015992245.1",
                "gtdb_species": "s__Halomonas sp015992245",
                "ani": 87.6264,
                "matched_fragments": 1060,
                "total_fragments": 1454,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Halomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.35",
                "min_intra_species_ani": "99.35",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_011742915.1",
                "gtdb_species": "s__Halomonas desiderata",
                "ani": 86.3451,
                "matched_fragments": 1092,
                "total_fragments": 1454,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Halomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.30",
                "min_intra_species_ani": "98.24",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_003254665.1",
                "gtdb_species": "s__Halomonas lactosivorans",
                "ani": 86.3154,
                "matched_fragments": 1031,
                "total_fragments": 1454,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Halomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_017868935.1",
                "gtdb_species": "s__Halomonas sp017868935",
                "ani": 86.0666,
                "matched_fragments": 1051,
                "total_fragments": 1454,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Halomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000246875.1",
                "gtdb_species": "s__Halomonas sp000246875",
                "ani": 85.9727,
                "matched_fragments": 1069,
                "total_fragments": 1454,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Halomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_011742165.1",
                "gtdb_species": "s__Halomonas bachuensis",
                "ani": 85.153,
                "matched_fragments": 1076,
                "total_fragments": 1454,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Halomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_013697085.1",
                "gtdb_species": "s__Halomonas kenyensis",
                "ani": 84.6547,
                "matched_fragments": 983,
                "total_fragments": 1454,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Halomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014931605.1",
                "gtdb_species": "s__Halomonas sp014931605",
                "ani": 84.5944,
                "matched_fragments": 970,
                "total_fragments": 1454,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Halomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014193375.1",
                "gtdb_species": "s__Halomonas campaniensis",
                "ani": 82.5602,
                "matched_fragments": 772,
                "total_fragments": 1454,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Halomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Billgrantia",
        "zhangzhouensis"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}