{ "type": "genome", "identifier": "GCF_021412585.1", "organism": "Halomonas alkalisoli", "title": "Halomonas alkalisoli", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Inner Mongolia university", "publication": [ {} ], "properties": { "assembly_accession": "GCF_021412585.1", "bioproject": "PRJNA224116", "biosample": "SAMN24502862", "wgs_master": "JAKCMI000000000.1", "refseq_category": "reference genome", "taxid": "2907158", "species_taxid": "2907158", "organism_name": "Halomonas alkalisoli", "infraspecific_name": "strain=M5N1S17", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/01/10", "asm_name": "ASM2141258v1", "asm_submitter": "Inner Mongolia university", "gbrs_paired_asm": "GCA_021412585.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/021/412/585/GCF_021412585.1_ASM2141258v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4875754", "genome_size_ungapped": "4875754", "gc_percent": "63.500000", "replicon_count": "0", "scaffold_count": "47", "contig_count": "47", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_021412585.1-RS_2024_08_08", "annotation_date": "2024-08-08", "total_gene_count": "4503", "protein_coding_gene_count": "4400", "non_coding_gene_count": "70", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-01-10", "dateModified": "2022-01-10", "datePublished": "2022-01-10", "_annotation": { "sample_count": 1, "sample_organism": [ "Halomonas alkalisoli" ], "sample_taxid": [ "2907158" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Inner Mongolia" ], "sample_host_location_id": [], "data_size": "1.357 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4875754", "Number of Sequences": "47", "Longest Sequences (bp)": "393343", "N50 (bp)": "221850", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "63.7", "Number of CDSs": "4390", "Average Protein Length": "325.1", "Coding Ratio (%)": "87.8", "Number of rRNAs": "5", "Number of tRNAs": "59", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Halomonas alkalisoli", "strain": "strain=M5N1S17", "accession": "GCA_021412585.1", "taxid": 2907158, "species_taxid": 2907158, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1597, "total_fragments": 1601, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Halomonas montanilacus", "strain": "strain=PYC7W", "accession": "GCA_003336675.1", "taxid": 2282305, "species_taxid": 2282305, "relation_to_type": "type", "validated": true, "ani": 92.5478, "matched_fragments": 1218, "total_fragments": 1601, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas heilongjiangensis", "strain": "strain=9-2", "accession": "GCA_003202165.1", "taxid": 1387883, "species_taxid": 1387883, "relation_to_type": "type", "validated": true, "ani": 83.9855, "matched_fragments": 1001, "total_fragments": 1601, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas heilongjiangensis", "strain": "strain=DSM 26881", "accession": "GCA_002879645.1", "taxid": 1387883, "species_taxid": 1387883, "relation_to_type": "type", "validated": true, "ani": 83.9523, "matched_fragments": 977, "total_fragments": 1601, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas campisalis", "strain": "strain=A4", "accession": "GCA_022341425.1", "taxid": 74661, "species_taxid": 74661, "relation_to_type": "type", "validated": true, "ani": 83.9048, "matched_fragments": 944, "total_fragments": 1601, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas lactosivorans", "strain": "strain=KCTC 52281", "accession": "GCA_003254665.1", "taxid": 2185141, "species_taxid": 2185141, "relation_to_type": "type", "validated": true, "ani": 83.8263, "matched_fragments": 1003, "total_fragments": 1601, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas sulfidoxydans", "strain": "strain=MCCC 1A11059", "accession": "GCA_017868775.1", "taxid": 2733484, "species_taxid": 2733484, "relation_to_type": "type", "validated": true, "ani": 83.7035, "matched_fragments": 1010, "total_fragments": 1601, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas endophytica", "strain": "strain=MC28", "accession": "GCA_002879615.1", "taxid": 2033802, "species_taxid": 2033802, "relation_to_type": "type", "validated": true, "ani": 83.5605, "matched_fragments": 935, "total_fragments": 1601, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas aerodenitrificans", "strain": "strain=MCCC 1A11058", "accession": "GCA_021404405.1", "taxid": 2733483, "species_taxid": 2733483, "relation_to_type": "type", "validated": true, "ani": 83.5133, "matched_fragments": 1082, "total_fragments": 1601, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas ethanolica", "strain": "strain=MCCC 1A11081", "accession": "GCA_021404305.1", "taxid": 2733486, "species_taxid": 2733486, "relation_to_type": "type", "validated": true, "ani": 83.3863, "matched_fragments": 1057, "total_fragments": 1601, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas tianxiuensis", "strain": "strain=BC-M4-5", "accession": "GCA_009834345.1", "taxid": 2497861, "species_taxid": 2497861, "relation_to_type": "type", "validated": true, "ani": 83.1283, "matched_fragments": 1026, "total_fragments": 1601, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas campaniensis", "strain": "strain=5AG", "accession": "GCA_014193375.1", "taxid": 213554, "species_taxid": 213554, "relation_to_type": "type", "validated": true, "ani": 83.0849, "matched_fragments": 880, "total_fragments": 1601, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas kenyensis", "strain": "strain=DSM 17331", "accession": "GCA_022341445.1", "taxid": 321266, "species_taxid": 321266, "relation_to_type": "type", "validated": true, "ani": 82.9035, "matched_fragments": 963, "total_fragments": 1601, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas kenyensis", "strain": "strain=DSM 17331", "accession": "GCA_013697085.1", "taxid": 321266, "species_taxid": 321266, "relation_to_type": "type", "validated": true, "ani": 82.8138, "matched_fragments": 955, "total_fragments": 1601, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas bachuensis", "strain": "strain=DX6", "accession": "GCA_011742165.1", "taxid": 2717286, "species_taxid": 2717286, "relation_to_type": "type", "validated": true, "ani": 82.7276, "matched_fragments": 955, "total_fragments": 1601, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas pellis", "strain": "strain=L5", "accession": "GCA_008297955.1", "taxid": 2606936, "species_taxid": 2606936, "relation_to_type": "type", "validated": true, "ani": 81.9948, "matched_fragments": 849, "total_fragments": 1601, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003336675.1", "gtdb_species": "s__Halomonas montanilacus", "ani": 92.5478, "matched_fragments": 1218, "total_fragments": 1601, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Halomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001545155.1", "gtdb_species": "s__Halomonas chromatireducens", "ani": 91.6975, "matched_fragments": 1124, "total_fragments": 1601, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Halomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_007129225.1", "gtdb_species": "s__Halomonas sp007129225", "ani": 89.7737, "matched_fragments": 744, "total_fragments": 1601, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Halomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003339685.1", "gtdb_species": "s__Halomonas sp003339685", "ani": 89.6706, "matched_fragments": 976, "total_fragments": 1601, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Halomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002879645.1", "gtdb_species": "s__Halomonas heilongjiangensis", "ani": 83.96, "matched_fragments": 973, "total_fragments": 1601, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Halomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.98", "min_intra_species_ani": "99.98", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_002879615.1", "gtdb_species": "s__Halomonas endophytica", "ani": 83.546, "matched_fragments": 934, "total_fragments": 1601, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Halomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_013697085.1", "gtdb_species": "s__Halomonas kenyensis", "ani": 82.8155, "matched_fragments": 954, "total_fragments": 1601, "gtdb_taxonomy": 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"d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Halomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003553625.1", "gtdb_species": "s__Halomonas sp003553625", "ani": 82.0596, "matched_fragments": 603, "total_fragments": 1601, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Halomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.75", "min_intra_species_ani": "98.58", "mean_intra_species_af": "0.84", "min_intra_species_af": "0.80", "num_clustered_genomes": 4, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.121, "cell_length": 0.276, "doubling_h": 0.239, "growth_tmp": 30.353, "optimum_tmp": 31.375, "optimum_ph": 7.642, "genome_size": 3925920.429, "gc_content": 60.3, "coding_genes": 3582.761, "rRNA16S_genes": 3.8, "tRNA_genes": 63.428, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.808, "range_salinity": 1.0, "facultative_respiration": 0.164, "anaerobic_respiration": 0.0, "aerobic_respiration": 0.835, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.961, "coccus_cell_shape": 0.019, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.019, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Halomonas", "alkalisoli" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }