{ "type": "genome", "identifier": "GCF_021462405.1", "organism": "Thermus tengchongensis", "title": "Thermus tengchongensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "School of Life Science", "publication": [ {} ], "properties": { "assembly_accession": "GCF_021462405.1", "bioproject": "PRJNA224116", "biosample": "SAMN24394317", "wgs_master": "JAKEDU000000000.1", "refseq_category": "reference genome", "taxid": "1214928", "species_taxid": "1214928", "organism_name": "Thermus tengchongensis", "infraspecific_name": "strain=YIM 77924", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/01/13", "asm_name": "ASM2146240v1", "asm_submitter": "School of Life Science", "gbrs_paired_asm": "GCA_021462405.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/021/462/405/GCF_021462405.1_ASM2146240v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2379615", "genome_size_ungapped": "2379178", "gc_percent": "66.500000", "replicon_count": "0", "scaffold_count": "27", "contig_count": "27", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_021462405.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "2630", "protein_coding_gene_count": "2523", "non_coding_gene_count": "55", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-01-13", "dateModified": "2022-01-13", "datePublished": "2022-01-13", "_annotation": { "sample_count": 1, "sample_organism": [ "Thermus tengchongensis" ], "sample_taxid": [ "1214928" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Yunnan" ], "sample_host_location_id": [], "data_size": "0.643 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2379615", "Number of Sequences": "27", "Longest Sequences (bp)": "431314", "N50 (bp)": "210027", "Gap Ratio (%)": "0.018995", "GCcontent (%)": "66.4", "Number of CDSs": "2566", "Average Protein Length": "289.6", "Coding Ratio (%)": "93.7", "Number of rRNAs": "3", "Number of tRNAs": "47", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Thermus tengchongensis", "strain": "strain=YIM 77924", "accession": "GCA_021462405.1", "taxid": 1214928, "species_taxid": 1214928, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 776, "total_fragments": 779, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Thermus caliditerrae", "strain": "strain=YIM 77925", "accession": "GCA_021462525.1", "taxid": 1330700, "species_taxid": 1330700, "relation_to_type": "type", "validated": true, "ani": 93.5813, "matched_fragments": 641, "total_fragments": 779, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermus caldilimi", "strain": "strain=YIM 78456", "accession": "GCA_004684245.1", "taxid": 2483360, "species_taxid": 2483360, "relation_to_type": "type", "validated": true, "ani": 90.482, "matched_fragments": 634, "total_fragments": 779, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermus tenuipuniceus", "strain": "strain=YIM 76954", "accession": "GCA_002964845.1", "taxid": 2078690, "species_taxid": 2078690, "relation_to_type": "type", "validated": true, "ani": 89.9863, "matched_fragments": 613, "total_fragments": 779, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermus brevis", "strain": "strain=SYSU G05001", "accession": "GCA_019430925.1", "taxid": 2862456, "species_taxid": 2862456, "relation_to_type": "type", "validated": true, "ani": 89.8833, "matched_fragments": 630, "total_fragments": 779, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermus antranikianii", "strain": "strain=DSM 12462", "accession": "GCA_000423905.1", "taxid": 88190, "species_taxid": 88190, "relation_to_type": "type", "validated": true, "ani": 89.5546, "matched_fragments": 607, "total_fragments": 779, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermus scotoductus", "strain": "strain=DSM 8553", "accession": "GCA_000381045.1", "taxid": 37636, "species_taxid": 37636, "relation_to_type": "suspected-type", "validated": true, "ani": 89.4736, "matched_fragments": 535, "total_fragments": 779, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermus amyloliquefaciens", "strain": "strain=YIM 77409", "accession": "GCA_000744885.1", "taxid": 1449080, "species_taxid": 1449080, "relation_to_type": "type", "validated": true, "ani": 89.4029, "matched_fragments": 611, "total_fragments": 779, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermus caldifontis", "strain": "strain=YIM 73026", "accession": "GCA_003336745.1", "taxid": 1930763, "species_taxid": 1930763, "relation_to_type": "type", "validated": true, "ani": 87.1866, "matched_fragments": 585, "total_fragments": 779, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000744175.1", "gtdb_species": "s__Thermus tengchongensis", "ani": 97.7693, "matched_fragments": 684, "total_fragments": 779, "gtdb_taxonomy": "d__Bacteria;p__Deinococcota;c__Deinococci;o__Deinococcales;f__Thermaceae;g__Thermus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.07", "min_intra_species_ani": "97.71", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.87", "num_clustered_genomes": 3, "status": "conclusive" }, { "accession": "GCF_000745065.1", "gtdb_species": "s__Thermus caliditerrae", "ani": 92.7957, "matched_fragments": 640, "total_fragments": 779, "gtdb_taxonomy": "d__Bacteria;p__Deinococcota;c__Deinococci;o__Deinococcales;f__Thermaceae;g__Thermus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004684245.1", "gtdb_species": "s__Thermus caldilimi", "ani": 90.482, "matched_fragments": 634, "total_fragments": 779, "gtdb_taxonomy": "d__Bacteria;p__Deinococcota;c__Deinococci;o__Deinococcales;f__Thermaceae;g__Thermus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002964845.1", "gtdb_species": "s__Thermus tenuipuniceus", "ani": 89.9863, "matched_fragments": 613, "total_fragments": 779, "gtdb_taxonomy": "d__Bacteria;p__Deinococcota;c__Deinococci;o__Deinococcales;f__Thermaceae;g__Thermus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000423905.1", "gtdb_species": "s__Thermus antranikianii", "ani": 89.5392, "matched_fragments": 608, "total_fragments": 779, "gtdb_taxonomy": "d__Bacteria;p__Deinococcota;c__Deinococci;o__Deinococcales;f__Thermaceae;g__Thermus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.31", "min_intra_species_ani": "98.31", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000381045.1", "gtdb_species": "s__Thermus scotoductus", "ani": 89.5015, "matched_fragments": 534, "total_fragments": 779, "gtdb_taxonomy": "d__Bacteria;p__Deinococcota;c__Deinococci;o__Deinococcales;f__Thermaceae;g__Thermus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.38", "min_intra_species_ani": "95.93", "mean_intra_species_af": "0.81", "min_intra_species_af": "0.76", "num_clustered_genomes": 44, "status": "-" }, { "accession": "GCF_000744885.1", "gtdb_species": "s__Thermus amyloliquefaciens", "ani": 89.4095, "matched_fragments": 610, "total_fragments": 779, "gtdb_taxonomy": "d__Bacteria;p__Deinococcota;c__Deinococci;o__Deinococcales;f__Thermaceae;g__Thermus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003336745.1", "gtdb_species": "s__Thermus caldifontis", 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"filament_cell_shape": 0.09, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Thermus", "tengchongensis" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }