{ "type": "genome", "identifier": "GCF_021462525.1", "organism": "Thermus caliditerrae", "title": "Thermus caliditerrae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "School of Life Science", "publication": [ {} ], "properties": { "assembly_accession": "GCF_021462525.1", "bioproject": "PRJNA224116", "biosample": "SAMN24394318", "wgs_master": "JAKEDT000000000.1", "refseq_category": "reference genome", "taxid": "1330700", "species_taxid": "1330700", "organism_name": "Thermus caliditerrae", "infraspecific_name": "strain=YIM 77925", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/01/13", "asm_name": "ASM2146252v1", "asm_submitter": "School of Life Science", "gbrs_paired_asm": "GCA_021462525.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/021/462/525/GCF_021462525.1_ASM2146252v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2315988", "genome_size_ungapped": "2315988", "gc_percent": "67.000000", "replicon_count": "0", "scaffold_count": "45", "contig_count": "45", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_021462525.1-RS_2024_08_05", "annotation_date": "2024-08-05", "total_gene_count": "2472", "protein_coding_gene_count": "2382", "non_coding_gene_count": "58", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-01-13", "dateModified": "2022-01-13", "datePublished": "2022-01-13", "_annotation": { "sample_count": 1, "sample_organism": [ "Thermus caliditerrae" ], "sample_taxid": [ "1330700" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Yunnan" ], "sample_host_location_id": [], "data_size": "0.626 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2315988", "Number of Sequences": "45", "Longest Sequences (bp)": "363713", "N50 (bp)": "86124", "Gap Ratio (%)": "0.001770", "GCcontent (%)": "67.1", "Number of CDSs": "2408", "Average Protein Length": "301.2", "Coding Ratio (%)": "94.0", "Number of rRNAs": "3", "Number of tRNAs": "52", "Number of CRISPRs": "5" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Thermus caliditerrae", "strain": "strain=YIM 77925", "accession": "GCA_021462525.1", "taxid": 1330700, "species_taxid": 1330700, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 746, "total_fragments": 750, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Thermus tengchongensis", "strain": "strain=YIM 77924", "accession": "GCA_021462405.1", "taxid": 1214928, "species_taxid": 1214928, "relation_to_type": "type", "validated": true, "ani": 93.6159, "matched_fragments": 644, "total_fragments": 750, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermus amyloliquefaciens", "strain": "strain=YIM 77409", "accession": "GCA_000744885.1", "taxid": 1449080, "species_taxid": 1449080, "relation_to_type": "type", "validated": true, "ani": 87.9598, "matched_fragments": 607, "total_fragments": 750, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermus thermamylovorans", "strain": "strain=CFH 72773T", "accession": "GCA_004307015.1", "taxid": 2509362, "species_taxid": 2509362, "relation_to_type": "type", "validated": true, "ani": 87.8369, "matched_fragments": 575, "total_fragments": 750, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermus tenuipuniceus", "strain": "strain=YIM 76954", "accession": "GCA_002964845.1", "taxid": 2078690, "species_taxid": 2078690, "relation_to_type": "type", "validated": true, "ani": 87.2373, "matched_fragments": 592, "total_fragments": 750, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermus brevis", "strain": "strain=SYSU G05001", "accession": "GCA_019430925.1", "taxid": 2862456, "species_taxid": 2862456, "relation_to_type": "type", "validated": true, "ani": 86.9797, "matched_fragments": 599, "total_fragments": 750, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermus igniterrae", "strain": "strain=ATCC 700962", "accession": "GCA_000376265.1", "taxid": 88189, "species_taxid": 88189, "relation_to_type": "type", "validated": true, "ani": 86.6182, "matched_fragments": 584, "total_fragments": 750, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermus arciformis", "strain": "strain=JCM 15153", "accession": "GCA_022556335.1", "taxid": 482827, "species_taxid": 482827, "relation_to_type": "type", "validated": true, "ani": 85.8379, "matched_fragments": 596, "total_fragments": 750, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermus arciformis", "strain": "strain=CGMCC 1.6992", "accession": "GCA_900102145.1", "taxid": 482827, "species_taxid": 482827, "relation_to_type": "type", "validated": true, "ani": 85.7701, "matched_fragments": 605, "total_fragments": 750, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermus caldifontis", "strain": "strain=YIM 73026", "accession": "GCA_003336745.1", "taxid": 1930763, "species_taxid": 1930763, "relation_to_type": "type", "validated": true, "ani": 85.5639, "matched_fragments": 575, "total_fragments": 750, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermus aquaticus", "strain": "strain=YT-1", "accession": "GCA_001280255.1", "taxid": 271, "species_taxid": 271, "relation_to_type": "type", "validated": true, "ani": 85.1691, "matched_fragments": 577, "total_fragments": 750, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000745065.1", "gtdb_species": "s__Thermus caliditerrae", "ani": 96.8019, "matched_fragments": 670, "total_fragments": 750, "gtdb_taxonomy": "d__Bacteria;p__Deinococcota;c__Deinococci;o__Deinococcales;f__Thermaceae;g__Thermus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_000744175.1", "gtdb_species": "s__Thermus tengchongensis", "ani": 93.3045, "matched_fragments": 635, "total_fragments": 750, "gtdb_taxonomy": "d__Bacteria;p__Deinococcota;c__Deinococci;o__Deinococcales;f__Thermaceae;g__Thermus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.07", "min_intra_species_ani": "97.71", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.87", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_000744885.1", "gtdb_species": "s__Thermus amyloliquefaciens", "ani": 87.9638, "matched_fragments": 605, "total_fragments": 750, "gtdb_taxonomy": "d__Bacteria;p__Deinococcota;c__Deinococci;o__Deinococcales;f__Thermaceae;g__Thermus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004307015.1", "gtdb_species": "s__Thermus thermamylovorans", "ani": 87.8369, "matched_fragments": 575, "total_fragments": 750, "gtdb_taxonomy": "d__Bacteria;p__Deinococcota;c__Deinococci;o__Deinococcales;f__Thermaceae;g__Thermus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000376265.1", "gtdb_species": "s__Thermus igniterrae", "ani": 86.6351, "matched_fragments": 583, "total_fragments": 750, "gtdb_taxonomy": "d__Bacteria;p__Deinococcota;c__Deinococci;o__Deinococcales;f__Thermaceae;g__Thermus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000423905.1", "gtdb_species": "s__Thermus antranikianii", "ani": 86.4535, "matched_fragments": 572, "total_fragments": 750, "gtdb_taxonomy": "d__Bacteria;p__Deinococcota;c__Deinococci;o__Deinococcales;f__Thermaceae;g__Thermus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.31", "min_intra_species_ani": "98.31", "mean_intra_species_af": "0.92", 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"matched_fragments": 580, "total_fragments": 750, "gtdb_taxonomy": "d__Bacteria;p__Deinococcota;c__Deinococci;o__Deinococcales;f__Thermaceae;g__Thermus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001880325.1", "gtdb_species": "s__Thermus brockianus", "ani": 85.2927, "matched_fragments": 569, "total_fragments": 750, "gtdb_taxonomy": "d__Bacteria;p__Deinococcota;c__Deinococci;o__Deinococcales;f__Thermaceae;g__Thermus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001280255.1", "gtdb_species": "s__Thermus aquaticus", "ani": 85.1747, "matched_fragments": 576, "total_fragments": 750, "gtdb_taxonomy": 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