{ "type": "genome", "identifier": "GCF_021532615.1", "organism": "Octadecabacter dasysiphoniae", "title": "Octadecabacter dasysiphoniae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Chung-Ang university", "publication": [ {} ], "properties": { "assembly_accession": "GCF_021532615.1", "bioproject": "PRJNA224116", "biosample": "SAMN24813606", "wgs_master": "JAKGAQ000000000.1", "refseq_category": "reference genome", "taxid": "2909341", "species_taxid": "2909341", "organism_name": "Octadecabacter dasysiphoniae", "infraspecific_name": "strain=G9-8", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/01/19", "asm_name": "ASM2153261v1", "asm_submitter": "Chung-Ang university", "gbrs_paired_asm": "GCA_021532615.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/021/532/615/GCF_021532615.1_ASM2153261v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3758812", "genome_size_ungapped": "3758812", "gc_percent": "57.000000", "replicon_count": "0", "scaffold_count": "39", "contig_count": "39", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-03-08", "total_gene_count": "3712", "protein_coding_gene_count": "3635", "non_coding_gene_count": "48", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-01-19", "dateModified": "2022-01-19", "datePublished": "2022-01-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Octadecabacter dasysiphoniae" ], "sample_taxid": [ "2909341" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Goseong-gu, Gangwon-don" ], "sample_host_location_id": [], "data_size": "1.059 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3758812", "Number of Sequences": "39", "Longest Sequences (bp)": "1414694", "N50 (bp)": "1074921", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "56.9", "Number of CDSs": "3677", "Average Protein Length": "309.9", "Coding Ratio (%)": "91.0", "Number of rRNAs": "3", "Number of tRNAs": "41", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Octadecabacter ascidiaceicola", "strain": "strain=CECT 8868", "accession": "GCA_900185015.1", "taxid": 1655543, "species_taxid": 1655543, "relation_to_type": "type", "validated": true, "ani": 79.364, "matched_fragments": 518, "total_fragments": 1240, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Octadecabacter temperatus", "strain": "strain=SB1", "accession": "GCA_001187845.1", "taxid": 1458307, "species_taxid": 1458307, "relation_to_type": "type", "validated": true, "ani": 79.2149, "matched_fragments": 484, "total_fragments": 1240, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Octadecabacter temperatus", "strain": "strain=DSM 26878", "accession": "GCA_900142425.1", "taxid": 1458307, "species_taxid": 1458307, "relation_to_type": "type", "validated": true, "ani": 79.2031, "matched_fragments": 494, "total_fragments": 1240, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Octadecabacter antarcticus", "strain": "strain=307", "accession": "GCA_000155675.2", "taxid": 1217908, "species_taxid": 1217908, "relation_to_type": "type", "validated": true, "ani": 79.0958, "matched_fragments": 534, "total_fragments": 1240, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Octadecabacter arcticus", "strain": "strain=238", "accession": "GCA_000155735.2", "taxid": 53946, "species_taxid": 53946, "relation_to_type": "type", "validated": true, "ani": 79.0024, "matched_fragments": 547, "total_fragments": 1240, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thalassorhabdomicrobium marinisediminis", "strain": "strain=BH-SD16", "accession": "GCA_003072065.1", "taxid": 2170577, "species_taxid": 2170577, "relation_to_type": "type", "validated": true, "ani": 78.1351, "matched_fragments": 368, "total_fragments": 1240, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Yoonia maritima", "strain": "strain=DSM 101533", "accession": "GCA_003003285.1", "taxid": 1435347, "species_taxid": 1435347, "relation_to_type": "type", "validated": true, "ani": 77.2746, "matched_fragments": 153, "total_fragments": 1240, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfitobacter geojensis", "strain": "strain=DSM 101063", "accession": "GCA_013407805.1", "taxid": 1342299, "species_taxid": 1342299, "relation_to_type": "type", "validated": true, "ani": 77.0088, "matched_fragments": 236, "total_fragments": 1240, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marivivens niveibacter", "strain": "strain=MCCC 1A06712", "accession": "GCA_002150005.2", "taxid": 1930667, "species_taxid": 1930667, "relation_to_type": "type", "validated": true, "ani": 76.7667, "matched_fragments": 146, "total_fragments": 1240, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alexandriicola marinus", "strain": "strain=LZ-14", "accession": "GCA_004000435.1", "taxid": 2081710, "species_taxid": 2081710, "relation_to_type": "type", "validated": true, "ani": 76.5002, "matched_fragments": 151, "total_fragments": 1240, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Puniceibacterium antarcticum", "strain": "strain=SM1211", "accession": "GCA_002760615.1", "taxid": 1206336, "species_taxid": 1206336, "relation_to_type": "type", "validated": true, "ani": 76.4845, "matched_fragments": 151, "total_fragments": 1240, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodobacter amnigenus", "strain": "strain=HSP-20", "accession": "GCA_009908265.2", "taxid": 2852097, "species_taxid": 2852097, "relation_to_type": "type", "validated": true, "ani": 76.4475, "matched_fragments": 99, "total_fragments": 1240, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lutimaribacter saemankumensis", "strain": "strain=DSM 28010", "accession": "GCA_900100005.1", "taxid": 490829, "species_taxid": 490829, "relation_to_type": "type", "validated": true, "ani": 76.4387, "matched_fragments": 140, "total_fragments": 1240, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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"num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.222, "cell_length": 0.38, "doubling_h": null, "growth_tmp": 4.0, "optimum_tmp": 20.0, "optimum_ph": null, "genome_size": 4371364.225, "gc_content": 54.361, "coding_genes": 4120.5, "rRNA16S_genes": 1.5, "tRNA_genes": 40.0, "gram_stain": 0.0, "sporulation": 0.0, "motility": null, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 0.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 1.0, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_genome_taxon": [ "Octadecabacter", "dasysiphoniae" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }