{ "type": "genome", "identifier": "GCF_021532625.1", "organism": "Octadecabacter algicola", "title": "Octadecabacter algicola", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Chung-Ang university", "publication": [ {} ], "properties": { "assembly_accession": "GCF_021532625.1", "bioproject": "PRJNA224116", "biosample": "SAMN24813627", "wgs_master": "JAKGAR000000000.1", "refseq_category": "reference genome", "taxid": "2909342", "species_taxid": "2909342", "organism_name": "Octadecabacter algicola", "infraspecific_name": "strain=D2-3", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/01/19", "asm_name": "ASM2153262v1", "asm_submitter": "Chung-Ang university", "gbrs_paired_asm": "GCA_021532625.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/021/532/625/GCF_021532625.1_ASM2153262v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3450422", "genome_size_ungapped": "3450422", "gc_percent": "54.500000", "replicon_count": "0", "scaffold_count": "14", "contig_count": "14", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-03-08", "total_gene_count": "3424", "protein_coding_gene_count": "3368", "non_coding_gene_count": "49", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-01-19", "dateModified": "2022-01-19", "datePublished": "2022-01-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Octadecabacter algicola" ], "sample_taxid": [ "2909342" ], "sample_host_organism": [ "Seaweed" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Goseong-gu Gangwon-don" ], "sample_host_location_id": [], "data_size": "0.982 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3450422", "Number of Sequences": "14", "Longest Sequences (bp)": "1361365", "N50 (bp)": "868281", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "54.4", "Number of CDSs": "3388", "Average Protein Length": "307.8", "Coding Ratio (%)": "90.7", "Number of rRNAs": "3", "Number of tRNAs": "45", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Octadecabacter temperatus", "strain": "strain=DSM 26878", "accession": "GCA_900142425.1", "taxid": 1458307, "species_taxid": 1458307, "relation_to_type": "type", "validated": true, "ani": 79.6134, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Octadecabacter antarcticus", "strain": "strain=307", "accession": "GCA_000155675.2", "taxid": 1217908, "species_taxid": 1217908, "relation_to_type": "type", "validated": true, "ani": 77.6346, "matched_fragments": 340, "total_fragments": 1147, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thalassorhabdomicrobium marinisediminis", "strain": "strain=BH-SD16", "accession": "GCA_003072065.1", "taxid": 2170577, "species_taxid": 2170577, "relation_to_type": "type", "validated": true, "ani": 77.508, "matched_fragments": 267, "total_fragments": 1147, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Yoonia maritima", "strain": "strain=DSM 101533", "accession": "GCA_003003285.1", "taxid": 1435347, "species_taxid": 1435347, "relation_to_type": "type", "validated": true, "ani": 77.5046, "matched_fragments": 159, "total_fragments": 1147, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudooctadecabacter jejudonensis", "strain": "strain=CECT 8397", "accession": "GCA_900172275.1", "taxid": 1391910, "species_taxid": 1391910, "relation_to_type": "type", "validated": true, "ani": 77.4705, "matched_fragments": 292, "total_fragments": 1147, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Zongyanglinia huanghaiensis", "strain": "strain=CY05", "accession": "GCA_009753675.1", "taxid": 2682100, "species_taxid": 2682100, "relation_to_type": "type", "validated": true, "ani": 77.1045, "matched_fragments": 103, "total_fragments": 1147, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marivivens aquimaris", "strain": "strain=GSB7", "accession": "GCA_015220045.1", "taxid": 2774876, "species_taxid": 2774876, "relation_to_type": "type", "validated": true, "ani": 76.7819, "matched_fragments": 99, "total_fragments": 1147, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phaeobacter porticola", "strain": "strain=P97", "accession": "GCA_001888185.1", "taxid": 1844006, "species_taxid": 1844006, "relation_to_type": "type", "validated": true, "ani": 76.7612, "matched_fragments": 88, "total_fragments": 1147, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudopuniceibacterium antarcticum", "strain": "strain=HQ09", "accession": "GCA_014899185.1", "taxid": 2613965, "species_taxid": 2613965, "relation_to_type": "type", "validated": true, "ani": 76.5333, "matched_fragments": 87, "total_fragments": 1147, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudooceanicola endophyticus", "strain": "strain=CBS1P-1", "accession": "GCA_018760365.1", "taxid": 2841273, "species_taxid": 2841273, "relation_to_type": "type", "validated": true, "ani": 76.3434, "matched_fragments": 81, "total_fragments": 1147, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tabrizicola alkalilacus", "strain": 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