{ "type": "genome", "identifier": "GCF_021555155.1", "organism": "Rhizobium alarense", "title": "Rhizobium alarense", "description": "na", "data type": "Genome sequencing and assembly", "organization": "College of Life Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_021555155.1", "bioproject": "PRJNA224116", "biosample": "SAMN24424999", "wgs_master": "JAKGBU000000000.1", "refseq_category": "reference genome", "taxid": "2846851", "species_taxid": "2846851", "organism_name": "Rhizobium alarense", "infraspecific_name": "strain=TRM95111", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/01/23", "asm_name": "ASM2155515v1", "asm_submitter": "College of Life Sciences", "gbrs_paired_asm": "GCA_021555155.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/021/555/155/GCF_021555155.1_ASM2155515v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5204801", "genome_size_ungapped": "5194301", "gc_percent": "65.000000", "replicon_count": "0", "scaffold_count": "201", "contig_count": "201", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_021555155.1-RS_2024_12_11", "annotation_date": "2024-12-11", "total_gene_count": "5216", "protein_coding_gene_count": "5011", "non_coding_gene_count": "52", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-01-23", "dateModified": "2022-01-23", "datePublished": "2022-01-23", "_annotation": { "sample_count": 1, "sample_organism": [ "Rhizobium alarense" ], "sample_taxid": [ "2846851" ], "sample_host_organism": [ "Lotus japonicus" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Alar" ], "sample_host_location_id": [], "data_size": "1.438 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5204801", "Number of Sequences": "201", "Longest Sequences (bp)": "129904", "N50 (bp)": "47105", "Gap Ratio (%)": "0.201737", "GCcontent (%)": "65.1", "Number of CDSs": "4885", "Average Protein Length": "304.5", "Coding Ratio (%)": "85.7", "Number of rRNAs": "3", "Number of tRNAs": "48", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Shinella pollutisoli", "strain": "strain=KCTC 52677", "accession": "GCA_024609765.1", "taxid": 2250594, "species_taxid": 2250594, "relation_to_type": "type", "validated": true, "ani": 83.7836, "matched_fragments": 923, "total_fragments": 1630, 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