{ "type": "genome", "identifier": "GCF_021556435.1", "organism": "Gordonia tangerina", "title": "Gordonia tangerina", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Third Institute of Oceanography, Ministry of Natural Resources of PR China", "publication": [ {} ], "properties": { "assembly_accession": "GCF_021556435.1", "bioproject": "PRJNA224116", "biosample": "SAMN25040721", "wgs_master": "JAKGCU000000000.1", "refseq_category": "reference genome", "taxid": "2911060", "species_taxid": "2911060", "organism_name": "Gordonia tangerina", "infraspecific_name": "strain=GW1C4-4", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/01/23", "asm_name": "ASM2155643v1", "asm_submitter": "Third Institute of Oceanography, Ministry of Natural Resources of PR China", "gbrs_paired_asm": "GCA_021556435.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/021/556/435/GCF_021556435.1_ASM2155643v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5290294", "genome_size_ungapped": "5290294", "gc_percent": "66.500000", "replicon_count": "0", "scaffold_count": "67", "contig_count": "67", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_021556435.1-RS_2024_08_29", "annotation_date": "2024-08-29", "total_gene_count": "4937", "protein_coding_gene_count": "4789", "non_coding_gene_count": "59", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-01-23", "dateModified": "2022-01-23", "datePublished": "2022-01-23", "_annotation": { "sample_count": 1, "sample_organism": [ "Gordonia tangerina" ], "sample_taxid": [ "2911060" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Guanyinshan Coast, Xiamen, Fujian Province" ], "sample_host_location_id": [], "data_size": "1.456 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5290294", "Number of Sequences": "67", "Longest Sequences (bp)": "699369", "N50 (bp)": "161779", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "66.5", "Number of CDSs": "4932", "Average Protein Length": "323.3", "Coding Ratio (%)": "90.4", "Number of rRNAs": "1", "Number of tRNAs": "50", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Gordonia mangrovi", "strain": "strain=HNM0687", "accession": "GCA_009828195.1", "taxid": 2665643, "species_taxid": 2665643, "relation_to_type": "type", "validated": true, "ani": 86.5125, "matched_fragments": 1308, "total_fragments": 1728, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia mangrovi", "strain": "strain=HNM0687", "accession": "GCA_024734075.1", "taxid": 2665643, "species_taxid": 2665643, "relation_to_type": "type", "validated": true, "ani": 86.4631, "matched_fragments": 1310, "total_fragments": 1728, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia insulae", "strain": "strain=MMS17-SY073", "accession": "GCA_003855095.1", "taxid": 2420509, "species_taxid": 2420509, "relation_to_type": "type", "validated": true, "ani": 81.3642, "matched_fragments": 1040, "total_fragments": 1728, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia rhizosphera", "strain": "strain=NBRC 16068", "accession": "GCA_000298195.1", "taxid": 83341, "species_taxid": 83341, "relation_to_type": "type", "validated": true, "ani": 80.5612, "matched_fragments": 943, "total_fragments": 1728, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia hankookensis", "strain": "strain=ON-33", "accession": "GCA_014673215.1", "taxid": 589403, "species_taxid": 589403, "relation_to_type": "type", "validated": true, "ani": 80.4363, "matched_fragments": 935, "total_fragments": 1728, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia bronchialis", "strain": "strain=FDAARGOS_1594", "accession": "GCA_020731255.1", "taxid": 2054, "species_taxid": 2054, "relation_to_type": "type", "validated": true, "ani": 80.2448, "matched_fragments": 803, "total_fragments": 1728, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia bronchialis", "strain": "strain=NCTC10667", "accession": "GCA_900450805.1", "taxid": 2054, "species_taxid": 2054, "relation_to_type": "type", "validated": true, "ani": 80.2251, "matched_fragments": 833, "total_fragments": 1728, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia terrae", "strain": "strain=3612", "accession": "GCA_001698225.1", "taxid": 2055, "species_taxid": 2055, "relation_to_type": "suspected-type", "validated": true, "ani": 79.9586, "matched_fragments": 778, "total_fragments": 1728, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia terrae", "strain": "strain=NBRC 100016", "accession": "GCA_000248035.2", "taxid": 2055, "species_taxid": 2055, "relation_to_type": "suspected-type", "validated": true, "ani": 79.9202, "matched_fragments": 768, "total_fragments": 1728, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia terrae", "strain": "strain=NRRL B-16283", "accession": "GCA_003183825.1", "taxid": 2055, "species_taxid": 2055, "relation_to_type": "suspected-type", "validated": true, "ani": 79.9199, "matched_fragments": 790, "total_fragments": 1728, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia amicalis", "strain": "strain=DSM 44461", "accession": "GCA_012395955.1", "taxid": 89053, "species_taxid": 89053, "relation_to_type": "type", "validated": true, "ani": 79.9164, "matched_fragments": 751, "total_fragments": 1728, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia namibiensis", "strain": "strain=NBRC 108229", "accession": "GCA_000298235.1", "taxid": 168480, "species_taxid": 168480, "relation_to_type": "type", "validated": true, "ani": 79.7612, "matched_fragments": 766, "total_fragments": 1728, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia sputi", "strain": "strain=ATCC 29627", "accession": "GCA_012396255.1", "taxid": 36823, "species_taxid": 36823, "relation_to_type": "type", "validated": true, "ani": 79.1707, "matched_fragments": 645, "total_fragments": 1728, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia sihwensis", "strain": 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"vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Gordonia", "tangerina" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }