{ "type": "genome", "identifier": "GCF_021568775.1", "organism": "Antribacter soli", "title": "Antribacter soli", "description": "na", "data type": "Genome sequencing and assembly", "organization": "School of Life Science, Jiangsu Normal University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_021568775.1", "bioproject": "PRJNA224116", "biosample": "SAMN25028241", "wgs_master": "JAKGSG000000000.1", "refseq_category": "reference genome", "taxid": "2910976", "species_taxid": "2910976", "organism_name": "Antribacter soli", "infraspecific_name": "strain=KLBMP 9083", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/01/24", "asm_name": "ASM2156877v1", "asm_submitter": "School of Life Science, Jiangsu Normal University", "gbrs_paired_asm": "GCA_021568775.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/021/568/775/GCF_021568775.1_ASM2156877v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5059823", "genome_size_ungapped": "5059823", "gc_percent": "72.500000", "replicon_count": "0", "scaffold_count": "74", "contig_count": "74", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_021568775.1-RS_2024_08_29", "annotation_date": "2024-08-29", "total_gene_count": "4540", "protein_coding_gene_count": "4441", "non_coding_gene_count": "60", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-01-24", "dateModified": "2022-01-24", "datePublished": "2022-01-24", "_annotation": { "sample_count": 1, "sample_organism": [ "Antribacter soli" ], "sample_taxid": [ "2910976" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Guizhou" ], "sample_host_location_id": [], "data_size": "1.347 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5059823", "Number of Sequences": "74", "Longest Sequences (bp)": "374639", "N50 (bp)": "102942", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "72.3", "Number of CDSs": "4516", "Average Protein Length": "337.7", "Coding Ratio (%)": "90.4", "Number of rRNAs": "3", "Number of tRNAs": "68", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Promicromonospora citrea", "strain": "strain=ATCC 15908", "accession": "GCA_013004695.1", "taxid": 43677, "species_taxid": 43677, "relation_to_type": "type", "validated": true, "ani": 80.8235, "matched_fragments": 762, "total_fragments": 1648, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Promicromonospora citrea", "strain": "strain=JCM 3051", "accession": "GCA_014647735.1", "taxid": 43677, "species_taxid": 43677, "relation_to_type": "type", "validated": true, "ani": 80.7975, "matched_fragments": 808, "total_fragments": 1648, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Promicromonospora sukumoe", "strain": "strain=DSM 44121", "accession": "GCA_014137995.1", "taxid": 88382, "species_taxid": 88382, "relation_to_type": "type", "validated": true, "ani": 80.7495, "matched_fragments": 880, "total_fragments": 1648, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Promicromonospora kroppenstedtii", "strain": "strain=DSM 19349", "accession": "GCA_000515355.1", "taxid": 440482, "species_taxid": 440482, "relation_to_type": "type", "validated": true, "ani": 80.5484, "matched_fragments": 815, "total_fragments": 1648, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Promicromonospora umidemergens", "strain": "strain=DSM 22081", "accession": "GCA_024171995.1", "taxid": 629679, "species_taxid": 629679, "relation_to_type": "type", "validated": true, "ani": 80.3663, "matched_fragments": 843, "total_fragments": 1648, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Myceligenerans xiligouense", "strain": "strain=DSM 15700", "accession": "GCA_003814695.1", "taxid": 253184, "species_taxid": 253184, "relation_to_type": "type", "validated": true, "ani": 80.3473, "matched_fragments": 724, "total_fragments": 1648, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Myceligenerans indicum", "strain": "strain=I2", "accession": "GCA_016742955.1", "taxid": 2593663, "species_taxid": 2593663, "relation_to_type": "type", "validated": true, "ani": 79.8977, "matched_fragments": 676, "total_fragments": 1648, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulosimicrobium marinum", "strain": "strain=NBRC 110994", "accession": "GCA_020551945.1", "taxid": 1638992, "species_taxid": 1638992, "relation_to_type": "type", "validated": true, "ani": 79.8049, "matched_fragments": 649, "total_fragments": 1648, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulosimicrobium funkei", "strain": "strain=NBRC 104118", "accession": "GCA_001570825.1", "taxid": 264251, "species_taxid": 264251, "relation_to_type": "suspected-type", "validated": true, "ani": 79.7376, "matched_fragments": 698, "total_fragments": 1648, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulosimicrobium funkei", "strain": "strain=JCM 14302", "accession": "GCA_004519295.1", "taxid": 264251, "species_taxid": 264251, "relation_to_type": "suspected-type", "validated": true, "ani": 79.7354, "matched_fragments": 711, "total_fragments": 1648, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Myceligenerans salitolerans", "strain": "strain=XHU 5031", "accession": "GCA_017349295.1", "taxid": 1230528, "species_taxid": 1230528, "relation_to_type": "type", "validated": true, "ani": 79.6714, "matched_fragments": 673, "total_fragments": 1648, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sediminihabitans luteus", "strain": "strain=DSM 25478", "accession": "GCA_002797595.1", "taxid": 1138585, "species_taxid": 1138585, "relation_to_type": "type", "validated": true, "ani": 79.5276, "matched_fragments": 605, "total_fragments": 1648, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sediminihabitans luteus", "strain": "strain=NBRC 108568", "accession": "GCA_016863455.1", "taxid": 1138585, "species_taxid": 1138585, "relation_to_type": "type", "validated": true, "ani": 79.4748, "matched_fragments": 606, "total_fragments": 1648, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Isoptericola sediminis", "strain": "strain=JC619", "accession": "GCA_013085345.1", "taxid": 2733572, "species_taxid": 2733572, "relation_to_type": "type", "validated": true, "ani": 79.3629, "matched_fragments": 544, "total_fragments": 1648, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Isoptericola chiayiensis", "strain": "strain=KCTC 19740", "accession": "GCA_013149805.1", "taxid": 579446, "species_taxid": 579446, "relation_to_type": "type", "validated": true, "ani": 79.3493, "matched_fragments": 604, "total_fragments": 1648, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas biazotea", "strain": "strain=NBRC12680", "accession": "GCA_004306155.1", "taxid": 1709, "species_taxid": 1709, "relation_to_type": "type", "validated": true, "ani": 78.9575, "matched_fragments": 544, "total_fragments": 1648, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas palmilytica", "strain": "strain=EW123", "accession": "GCA_021590045.1", "taxid": 2608402, "species_taxid": 2608402, "relation_to_type": "type", "validated": true, "ani": 78.7516, "matched_fragments": 577, "total_fragments": 1648, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas gilvus", "strain": "strain=ATCC 13127", "accession": "GCA_000218545.1", "taxid": 11, "species_taxid": 11, "relation_to_type": "type", "validated": true, "ani": 78.5178, "matched_fragments": 504, "total_fragments": 1648, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas fulva", "strain": "strain=DKR-3", "accession": "GCA_018531375.1", "taxid": 2835530, "species_taxid": 2835530, "relation_to_type": "type", "validated": true, "ani": 78.4066, "matched_fragments": 546, "total_fragments": 1648, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas avistercoris", "strain": "strain=Sa3CUA2", "accession": "GCA_014836445.1", "taxid": 2762242, "species_taxid": 2762242, "relation_to_type": "type", "validated": true, "ani": 78.3005, "matched_fragments": 537, "total_fragments": 1648, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinotalea solisilvae", "strain": "strain=KACC 19191", "accession": "GCA_016464425.1", "taxid": 2072922, "species_taxid": 2072922, "relation_to_type": "type", "validated": true, "ani": 78.2554, "matched_fragments": 573, "total_fragments": 1648, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003946865.1", "gtdb_species": "s__Antribacter gilvus", "ani": 82.559, "matched_fragments": 985, "total_fragments": 1648, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Antribacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003058225.1", "gtdb_species": "s__Promicromonospora sp003058225", "ani": 81.5302, "matched_fragments": 961, "total_fragments": 1648, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Promicromonospora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.27", "min_intra_species_ani": "98.27", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.94", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_009663185.1", "gtdb_species": "s__Isoptericola sp009663185", "ani": 81.2505, "matched_fragments": 767, "total_fragments": 1648, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Isoptericola", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000215105.1", "gtdb_species": "s__Isoptericola variabilis_A", "ani": 80.9266, "matched_fragments": 698, "total_fragments": 1648, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Isoptericola", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.96", "min_intra_species_ani": "99.96", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.98", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_003096495.1", "gtdb_species": "s__Promicromonospora sukumoe_A", "ani": 80.9172, "matched_fragments": 880, "total_fragments": 1648, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Promicromonospora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_013004695.1", "gtdb_species": "s__Promicromonospora citrea", "ani": 80.8623, "matched_fragments": 757, "total_fragments": 1648, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Promicromonospora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.97", "min_intra_species_ani": "99.97", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_014137995.1", "gtdb_species": "s__Promicromonospora sukumoe", "ani": 80.7679, "matched_fragments": 877, "total_fragments": 1648, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Promicromonospora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003550025.1", "gtdb_species": "s__Promicromonospora thailandica", "ani": 80.7069, "matched_fragments": 885, "total_fragments": 1648, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Promicromonospora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000385135.1", "gtdb_species": "s__Promicromonospora sukumoe_B", "ani": 80.6778, "matched_fragments": 901, "total_fragments": 1648, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Promicromonospora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.99", "min_intra_species_ani": "95.99", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000515355.1", "gtdb_species": "s__Promicromonospora kroppenstedtii", "ani": 80.54, "matched_fragments": 817, "total_fragments": 1648, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Promicromonospora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.09", "min_intra_species_ani": "97.09", "mean_intra_species_af": "0.84", "min_intra_species_af": "0.84", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_001750215.1", "gtdb_species": "s__Xylanimonas variabilis_A", "ani": 80.5357, "matched_fragments": 522, "total_fragments": 1648, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Xylanimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009846865.1", "gtdb_species": "s__Xylanimonas puerhi", "ani": 80.1798, "matched_fragments": 664, "total_fragments": 1648, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Xylanimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_009783295.1", "gtdb_species": "s__Xylanimonas sp009783295", "ani": 79.9432, "matched_fragments": 587, "total_fragments": 1648, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Xylanimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016742955.1", "gtdb_species": "s__Myceligenerans indicum", "ani": 79.8816, "matched_fragments": 678, "total_fragments": 1648, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Myceligenerans", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900167525.1", "gtdb_species": "s__Isoptericola flava", "ani": 79.7515, "matched_fragments": 741, "total_fragments": 1648, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Isoptericola", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004519295.1", "gtdb_species": "s__Cellulosimicrobium funkei", "ani": 79.7385, "matched_fragments": 711, "total_fragments": 1648, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Cellulosimicrobium", "ani_circumscription_radius": 96.0261, "mean_intra_species_ani": "98.03", "min_intra_species_ani": "96.84", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.88", "num_clustered_genomes": 18, "status": "-" }, { "accession": "GCF_011634835.1", "gtdb_species": "s__Isoptericola sp011634835", "ani": 79.5852, "matched_fragments": 711, "total_fragments": 1648, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Isoptericola", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_013149805.1", "gtdb_species": "s__Isoptericola chiayiensis", "ani": 79.3443, "matched_fragments": 604, "total_fragments": 1648, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Isoptericola", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_genome_taxon": [ "Antribacter", "soli" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }