{ "type": "genome", "identifier": "GCF_021602465.1", "organism": "Pseudomonas urethralis", "title": "Pseudomonas urethralis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Department of Microbiology, Juntendo University School of Medicine", "publication": [ {} ], "properties": { "assembly_accession": "GCF_021602465.1", "bioproject": "PRJNA224116", "biosample": "SAMD00422635", "wgs_master": "BQIJ00000000.1", "refseq_category": "reference genome", "taxid": "2740517", "species_taxid": "2740517", "organism_name": "Pseudomonas urethralis", "infraspecific_name": "strain=BML-PP042", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/11/22", "asm_name": "ASM2160246v1", "asm_submitter": "Department of Microbiology, Juntendo University School of Medicine", "gbrs_paired_asm": "GCA_021602465.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/021/602/465/GCF_021602465.1_ASM2160246v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5948202", "genome_size_ungapped": "5948202", "gc_percent": "62.500000", "replicon_count": "0", "scaffold_count": "76", "contig_count": "76", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_021602465.1-RS_2024_09_09", "annotation_date": "2024-09-09", "total_gene_count": "5683", "protein_coding_gene_count": "5495", "non_coding_gene_count": "89", "pubmed_id": "35389240" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-11-22", "dateModified": "2021-11-22", "datePublished": "2021-11-22", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudomonas urethralis" ], "sample_taxid": [ "2740517" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Japan:Saitama, Kawagoe" ], "sample_host_location_id": [], "data_size": "1.650 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5948202", "Number of Sequences": "76", "Longest Sequences (bp)": "612685", "N50 (bp)": "337078", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "62.7", "Number of CDSs": "5548", "Average Protein Length": "318.6", "Coding Ratio (%)": "89.2", "Number of rRNAs": "4", "Number of tRNAs": "79", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudomonas urethralis", "strain": "strain=BML-PP042", "accession": "GCA_021602465.1", "taxid": 2740517, "species_taxid": 2740517, "relation_to_type": "suspected-type", "validated": true, "ani": 100.0, "matched_fragments": 1952, "total_fragments": 1955, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pseudomonas urethralis", "strain": "strain=BML-PP042", "accession": "GCA_013373915.1", "taxid": 2740517, "species_taxid": 2740517, "relation_to_type": "suspected-type", "validated": true, "ani": 99.9695, "matched_fragments": 1883, "total_fragments": 1955, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pseudomonas faucium", "strain": "strain=BML-PP048", "accession": "GCA_021602585.1", "taxid": 2740518, "species_taxid": 2740518, "relation_to_type": "type", "validated": true, "ani": 88.6539, "matched_fragments": 1432, "total_fragments": 1955, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas faucium", "strain": "strain=BML-PP048", "accession": "GCA_013373935.1", "taxid": 2740518, "species_taxid": 2740518, "relation_to_type": "type", 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87.8866, "matched_fragments": 1453, "total_fragments": 1955, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas putida", "strain": "strain=IPO3752", "accession": "GCA_013387005.1", "taxid": 303, "species_taxid": 303, "relation_to_type": "suspected-type", "validated": true, "ani": 87.4094, "matched_fragments": 1408, "total_fragments": 1955, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas anuradhapurensis", "strain": "strain=RD8MR3", "accession": "GCA_014269225.2", "taxid": 485870, "species_taxid": 485870, "relation_to_type": "type", "validated": true, "ani": 87.3708, "matched_fragments": 1391, "total_fragments": 1955, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas monteilii", "strain": "strain=DSM 14164", "accession": "GCA_000621245.1", "taxid": 76759, "species_taxid": 76759, "relation_to_type": "type", "validated": true, "ani": 87.1813, "matched_fragments": 1407, "total_fragments": 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