{ "type": "genome", "identifier": "GCF_021602585.1", "organism": "Pseudomonas faucium", "title": "Pseudomonas faucium", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Department of Microbiology, Juntendo University School of Medicine", "publication": [ {} ], "properties": { "assembly_accession": "GCF_021602585.1", "bioproject": "PRJNA224116", "biosample": "SAMD00422641", "wgs_master": "BQIP00000000.1", "refseq_category": "reference genome", "taxid": "2740518", "species_taxid": "2740518", "organism_name": "Pseudomonas faucium", "infraspecific_name": "strain=BML-PP048", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/11/22", "asm_name": "ASM2160258v1", "asm_submitter": "Department of Microbiology, Juntendo University School of Medicine", "gbrs_paired_asm": "GCA_021602585.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/021/602/585/GCF_021602585.1_ASM2160258v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5894173", "genome_size_ungapped": "5894173", "gc_percent": "64.000000", "replicon_count": "0", "scaffold_count": "89", "contig_count": "89", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_021602585.1-RS_2024_09_09", "annotation_date": "2024-09-09", "total_gene_count": "5477", "protein_coding_gene_count": "5287", "non_coding_gene_count": "93", "pubmed_id": "35389240" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-11-22", "dateModified": "2021-11-22", "datePublished": "2021-11-22", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudomonas faucium" ], "sample_taxid": [ "2740518" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Japan:Saitama, Kawagoe" ], "sample_host_location_id": [], "data_size": "1.620 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5894173", "Number of Sequences": "89", "Longest Sequences (bp)": "560767", "N50 (bp)": "219428", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "64.2", "Number of CDSs": "5279", "Average Protein Length": "330.7", "Coding Ratio (%)": "88.9", "Number of rRNAs": "1", "Number of tRNAs": "75", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudomonas faucium", "strain": "strain=BML-PP048", "accession": "GCA_021602585.1", "taxid": 2740518, "species_taxid": 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{ "organism_name": "Pseudomonas kermanshahensis", "strain": "strain=SWRI100", "accession": "GCA_014269205.2", "taxid": 2745482, "species_taxid": 2745482, "relation_to_type": "type", "validated": true, "ani": 87.6787, "matched_fragments": 1417, "total_fragments": 1932, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_013373935.1", "gtdb_species": "s__Pseudomonas_E sp002438125", "ani": 99.9578, "matched_fragments": 1784, "total_fragments": 1932, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.14", "min_intra_species_ani": "98.14", "mean_intra_species_af": "0.84", "min_intra_species_af": "0.84", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_000282535.1", "gtdb_species": 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