{ "type": "genome", "identifier": "GCF_021603585.1", "organism": "Pseudomonas sputi", "title": "Pseudomonas sputi", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Department of Microbiology, Juntendo University School of Medicine", "publication": [ {} ], "properties": { "assembly_accession": "GCF_021603585.1", "bioproject": "PRJNA224116", "biosample": "SAMD00422608", "wgs_master": "BQHI00000000.1", "refseq_category": "reference genome", "taxid": "2892325", "species_taxid": "2892325", "organism_name": "Pseudomonas sputi", "infraspecific_name": "strain=BML-PP014", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/11/22", "asm_name": "ASM2160358v1", "asm_submitter": "Department of Microbiology, Juntendo University School of Medicine", "gbrs_paired_asm": "GCA_021603585.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/021/603/585/GCF_021603585.1_ASM2160358v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6314991", "genome_size_ungapped": "6314991", "gc_percent": "60.500000", "replicon_count": "0", "scaffold_count": "105", "contig_count": "105", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_021603585.1-RS_2024_09_09", "annotation_date": "2024-09-09", "total_gene_count": "5920", "protein_coding_gene_count": "5708", "non_coding_gene_count": "84", "pubmed_id": "35389240" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-11-22", "dateModified": "2021-11-22", "datePublished": "2021-11-22", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudomonas sputi" ], "sample_taxid": [ "2892325" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Japan:Saitama, Kawagoe" ], "sample_host_location_id": [], "data_size": "1.768 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6314991", "Number of Sequences": "105", "Longest Sequences (bp)": "510986", "N50 (bp)": "219065", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "60.3", "Number of CDSs": "5722", "Average Protein Length": "325.5", "Coding Ratio (%)": "88.5", "Number of rRNAs": "1", "Number of tRNAs": "65", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudomonas sputi", "strain": "strain=BML-PP014", "accession": "GCA_021603585.1", "taxid": 2892325, "species_taxid": 2892325, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2065, "total_fragments": 2068, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pseudomonas pharyngis", "strain": "strain=BML-PP036", "accession": "GCA_021602345.1", "taxid": 2892333, "species_taxid": 2892333, "relation_to_type": "type", "validated": true, "ani": 94.2875, "matched_fragments": 1788, "total_fragments": 2068, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas allokribbensis", "strain": "strain=IzPS23", "accession": "GCA_014863605.1", "taxid": 2774460, "species_taxid": 2774460, "relation_to_type": "type", "validated": true, "ani": 91.5349, "matched_fragments": 1710, "total_fragments": 2068, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas kribbensis", "strain": "strain=46-2", "accession": "GCA_003352185.1", "taxid": 1628086, "species_taxid": 1628086, "relation_to_type": "type", "validated": true, "ani": 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1642, "total_fragments": 2068, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas monsensis", "strain": "strain=PGSB 8459", "accession": "GCA_014268495.2", "taxid": 2745509, "species_taxid": 2745509, "relation_to_type": "type", "validated": true, "ani": 88.3766, "matched_fragments": 1628, "total_fragments": 2068, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas neuropathica", "strain": "strain=P155", "accession": "GCA_015461835.1", "taxid": 2730425, "species_taxid": 2730425, "relation_to_type": "type", "validated": true, "ani": 88.0347, "matched_fragments": 1644, "total_fragments": 2068, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas germanica", "strain": "strain=FIT28", "accession": "GCA_019614655.1", "taxid": 2815720, "species_taxid": 2815720, "relation_to_type": "type", "validated": true, "ani": 87.9007, "matched_fragments": 1671, "total_fragments": 2068, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas hamedanensis", "strain": "strain=SWRI65", "accession": "GCA_014268595.2", "taxid": 2745504, "species_taxid": 2745504, "relation_to_type": "type", "validated": true, "ani": 87.3576, "matched_fragments": 1521, "total_fragments": 2068, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas moorei", "strain": "strain=CCUG 53114", "accession": "GCA_008801475.1", "taxid": 395599, "species_taxid": 395599, "relation_to_type": "type", "validated": true, "ani": 85.7974, "matched_fragments": 1370, "total_fragments": 2068, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas pergaminensis", "strain": "strain=1008", "accession": "GCA_024112395.1", "taxid": 2853159, "species_taxid": 2853159, "relation_to_type": "type", "validated": true, "ani": 83.6197, "matched_fragments": 1286, "total_fragments": 2068, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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