{ "type": "genome", "identifier": "GCF_021613355.1", "organism": "Pseudoalteromonas mariniglutinosa NCIMB 1770", "title": "Pseudoalteromonas mariniglutinosa NCIMB 1770", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Shandong University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_021613355.1", "bioproject": "PRJNA224116", "biosample": "SAMN03380240", "wgs_master": "AQHC00000000.1", "refseq_category": "reference genome", "taxid": "1315277", "species_taxid": "206042", "organism_name": "Pseudoalteromonas mariniglutinosa NCIMB 1770", "infraspecific_name": "strain=NCIMB 1770", "isolate": "na", "version_status": "latest", "assembly_level": "Chromosome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/01/26", "asm_name": "ASM2161335v1", "asm_submitter": "Shandong University", "gbrs_paired_asm": "GCA_021613355.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/021/613/355/GCF_021613355.1_ASM2161335v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5031620", "genome_size_ungapped": "5031620", "gc_percent": "41.000000", "replicon_count": "1", "scaffold_count": "27", "contig_count": "27", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-03-11", "total_gene_count": "4437", "protein_coding_gene_count": "4271", "non_coding_gene_count": "123", "pubmed_id": "33500342" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-01-26", "dateModified": "2022-01-26", "datePublished": "2022-01-26", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudoalteromonas mariniglutinosa NCIMB 1770" ], "sample_taxid": [ "1315277" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "France: Marseille" ], "sample_host_location_id": [], "data_size": "1.420 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5031620", "Number of Sequences": "27", "Longest Sequences (bp)": "1414176", "N50 (bp)": "416717", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "40.9", "Number of CDSs": "4310", "Average Protein Length": "343.7", "Coding Ratio (%)": "88.3", "Number of rRNAs": "7", "Number of tRNAs": "109", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudoalteromonas prydzensis", "strain": "strain=ACAM 620", "accession": "GCA_014925355.1", 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2518973, "relation_to_type": "type", "validated": true, "ani": 83.8316, "matched_fragments": 1086, "total_fragments": 1664, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoalteromonas neustonica", "strain": "strain=PAMC 28425", "accession": "GCA_001653135.1", "taxid": 1840331, "species_taxid": 1840331, "relation_to_type": "type", "validated": true, "ani": 82.3501, "matched_fragments": 884, "total_fragments": 1664, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoalteromonas tetraodonis", "strain": "strain=GFC", "accession": "GCA_002310835.1", "taxid": 43659, "species_taxid": 43659, "relation_to_type": "suspected-type", "validated": true, "ani": 80.6823, "matched_fragments": 595, "total_fragments": 1664, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoalteromonas tetraodonis", "strain": "strain=NBRC 103034", "accession": "GCA_007991235.1", "taxid": 43659, "species_taxid": 43659, "relation_to_type": "suspected-type", "validated": true, "ani": 80.4602, "matched_fragments": 594, "total_fragments": 1664, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoalteromonas undina", "strain": "strain=DSM 6065", "accession": "GCA_000238275.4", "taxid": 43660, "species_taxid": 43660, "relation_to_type": "type", "validated": true, "ani": 80.1744, "matched_fragments": 605, "total_fragments": 1664, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoalteromonas galatheae", "strain": "strain=S4498", "accession": "GCA_005886105.2", "taxid": 579562, "species_taxid": 579562, "relation_to_type": "type", "validated": true, "ani": 79.0597, "matched_fragments": 237, "total_fragments": 1664, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella basaltis", "strain": "strain=KCTC 22121", "accession": "GCA_023283885.1", "taxid": 472183, "species_taxid": 472183, "relation_to_type": "type", "validated": true, "ani": 76.2899, "matched_fragments": 73, "total_fragments": 1664, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio ulleungensis", "strain": "strain=188UL20-2", "accession": "GCA_016900875.1", "taxid": 2807619, "species_taxid": 2807619, "relation_to_type": "type", "validated": true, "ani": 76.26, "matched_fragments": 61, "total_fragments": 1664, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella schlegeliana", "strain": "strain=LMG 21406", "accession": "GCA_023283605.1", "taxid": 190308, "species_taxid": 190308, "relation_to_type": "type", "validated": true, "ani": 75.8859, "matched_fragments": 57, "total_fragments": 1664, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000238355.1", "gtdb_species": "s__Pseudoalteromonas haloplanktis", "ani": 99.9791, "matched_fragments": 1625, "total_fragments": 1664, 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"filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Pseudoalteromonas", "mariniglutinosa", "NCIMB", "1770" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }