# locus_id	locus_tag	location	classification	internal_stop	indel	ref_id	description	query_cov	ref_cov	identity
MGA_5	LOCUS_00050	sequence1:4044..4175(+)	partial			WP_012775462.1	helix-turn-helix transcriptional regulator	90.7	32.8	87.2
MGA_11	LOCUS_00110	sequence1:8057..8452(+)	partial			WP_002484696.1	replication initiator protein A	71.8	63.8	28.4
MGA_136	LOCUS_01340	sequence1:152561..153223(-)	partial			WP_010963358.1	YiiX/YebB-like N1pC/P60 family cysteine hydrolase	65.9	60.5	39.5
MGA_140	LOCUS_01380	sequence1:155098..155526(+)	internal_stop_codon	155524..155526(+)		WP_015064796.1	virulence RhuM family protein	97.2	39.7	60.9
MGA_157	LOCUS_01550	sequence1:170154..171044(-)	frameshift		171079	WP_100190734.1	IS3 family transposase	98.6	55.9	67.1
MGA_158	LOCUS_01560	sequence1:171038..171724(-)	frameshift		171079	WP_100190734.1	IS3 family transposase	96.1	42.0	65.3
MGA_174	LOCUS_01720	sequence1:183463..185430(+)	partial			WP_011038710.1	reverse transcriptase domain-containing protein	44.7	48.6	35.6
MGA_181	LOCUS_01790	sequence1:190699..191979(+)	frameshift		191949	WP_012027881.1	alkaline phosphatase family protein	98.1	51.4	76.6
MGA_182	LOCUS_01800	sequence1:191990..193144(+)	frameshift		191949	WP_012027881.1	alkaline phosphatase family protein	100.0	47.2	88.3
MGA_207	LOCUS_02050	sequence1:220997..221167(+)	partial			WP_000730572.1	AAA family ATPase	82.1	13.1	58.7
MGA_212	LOCUS_02100	sequence1:224359..225111(-)	frameshift		225130	WP_012775456.1	IS4 family transposase	100.0	58.3	91.6
MGA_213	LOCUS_02110	sequence1:225128..225649(-)	frameshift		225136	WP_012775456.1	IS4 family transposase	100.0	40.3	91.3
MGA_240	LOCUS_02380	sequence1:255490..256374(+)	partial			WP_010980522.1	ABC transporter ATP-binding protein	69.7	68.4	34.0
MGA_248	LOCUS_02460	sequence1:264557..265096(+)	partial			WP_011089550.1	aspartate/glutamate racemase family protein	95.5	69.6	34.3
MGA_275	LOCUS_02720	sequence1:294679..295533(+)	frameshift		295515	WP_002901047.1	Cof-type HAD-IIB family hydrolase	100.0	60.8	50.4
MGA_276	LOCUS_02730	sequence1:295526..296044(+)	frameshift		295521	WP_000453148.1	Cof-type HAD-IIB family hydrolase	99.4	36.9	62.0
MGA_279	LOCUS_02760	sequence1:298040..298792(-)	frameshift		298811	WP_012775456.1	IS4 family transposase	100.0	58.3	91.6
MGA_280	LOCUS_02770	sequence1:298809..299330(-)	frameshift		298817	WP_012775456.1	IS4 family transposase	100.0	40.3	91.3
MGA_290	LOCUS_02870	sequence1:309168..309518(+)	frameshift		309479	WP_074390220.1	IS630 family transposase	91.4	37.6	87.7
MGA_344	LOCUS_03410	sequence1:365087..365437(-)	frameshift		365125	WP_074390220.1	IS630 family transposase	91.4	37.6	87.7
MGA_370	LOCUS_03660	sequence1:395220..400244(+)	partial			WP_010989385.1	class 1 internalin InlG	7.0	23.7	35.5
MGA_394	LOCUS_03900	sequence1:425488..426108(+)	partial			WP_011836484.1	6-phospho-beta-glucosidase	99.0	42.6	82.4
MGA_446	LOCUS_04420	sequence1:480200..481081(+)	partial			WP_013384738.1	ATP-binding cassette domain-containing protein	83.3	70.8	45.1
MGA_458	LOCUS_04540	sequence1:491759..492538(+)	frameshift		492151,491685,492127	WP_000719722.1	site-2 protease family protein	98.1	70.4	33.7
MGA_465	LOCUS_04610	sequence1:499434..500156(+)	internal_stop_codon	500154..500156(+)		WP_012775310.1	polyprenyl synthetase family protein	100.0	72.9	83.8
MGA_517	LOCUS_05130	sequence1:547200..554099(+)	partial			WP_000278319.1	CshA/CshB family fibrillar adhesin-related protein	36.1	19.4	30.3
MGA_537	LOCUS_05330	sequence1:568435..569121(+)	frameshift		569079	WP_100190734.1	IS3 family transposase	96.1	42.0	65.3
MGA_538	LOCUS_05340	sequence1:569115..570005(+)	frameshift		569079	WP_100190734.1	IS3 family transposase	98.6	55.9	67.5
MGA_597	LOCUS_05930	sequence1:631559..631786(-)	partial			WP_011922101.1	MBL fold metallo-hydrolase	68.0	24.1	74.5
MGA_678	LOCUS_06740	sequence1:714711..714893(+)	partial			WP_012027403.1	ABC-F family ATP-binding cassette domain-containing protein	100.0	11.7	96.7
MGA_681	LOCUS_06770	sequence1:716446..716874(+)	partial			WP_004398494.1	cupin domain-containing protein	88.0	67.2	56.0
MGA_713	LOCUS_07090	sequence1:749117..749293(+)	partial			WP_000048054.1	30S ribosomal protein S21	74.1	74.1	100.0
MGA_732	LOCUS_07280	sequence1:772912..773262(-)	frameshift		772950	WP_074390220.1	IS630 family transposase	91.4	37.6	86.8
MGA_754	LOCUS_07500	sequence1:791412..791618(+)	internal_stop_codon	791616..791618(+)		WP_012027098.1	ATPase	100.0	43.6	69.1
MGA_755	LOCUS_07510	sequence1:791691..791882(+)	internal_stop_codon	791616..791618(+)		WP_012027098.1	ATPase	96.8	39.1	68.9
MGA_763	LOCUS_07590	sequence1:799384..799554(+)	partial			WP_012775586.1	bifunctional riboflavin kinase/FAD synthetase	94.6	17.3	90.6
MGA_802	LOCUS_07980	sequence1:833636..834187(+)	partial			WP_219718821.1	hypothetical protein	89.6	31.9	87.8
MGA_814	LOCUS_08100	sequence1:844577..844792(-)	partial			WP_000540278.1	Y-family DNA polymerase	98.6	14.9	62.9
MGA_828	LOCUS_08240	sequence1:855177..856139(+)	partial			WP_002985324.1	DNase Mf2	66.2	83.7	60.4
MGA_861	LOCUS_08570	sequence1:894011..903400(+)	partial			WP_051754043.1	polymorphic toxin-type HINT domain-containing protein	46.5	40.7	27.2
MGA_866	LOCUS_08620	sequence1:906654..907397(+)	partial			WP_012775427.1	LPXTG cell wall anchor domain-containing protein	91.1	29.8	33.3
MGA_869	LOCUS_08650	sequence1:909573..910463(-)	frameshift		910498	WP_100190734.1	IS3 family transposase	98.6	55.9	66.8
MGA_870	LOCUS_08660	sequence1:910457..911143(-)	frameshift		910498	WP_100190734.1	IS3 family transposase	96.1	42.0	64.4
MGA_893	LOCUS_08890	sequence1:935241..939140(+)	partial			WP_120171861.1	GBS Bsp-like repeat-containing protein	67.6	81.6	54.6
MGA_946	LOCUS_09420	sequence1:992592..993497(+)	partial			WP_014917249.1	A/G-specific adenine glycosylase	86.7	67.6	95.8
MGA_957	LOCUS_09530	sequence1:1005016..1005309(-)	partial			WP_000506270.1	conjugal transfer protein	100.0	57.7	76.3
MGA_964	LOCUS_09600	sequence1:1010117..1010491(+)	partial			WP_014917249.1	A/G-specific adenine glycosylase	99.2	31.9	95.1
MGA_983	LOCUS_09790	sequence1:1032070..1032711(+)	partial			WP_011016893.1	bifunctional glycosyltransferase family 2/GtrA family protein	98.6	60.8	43.2
MGA_984	LOCUS_09800	sequence1:1032713..1033096(+)	frameshift		1033048	WP_011861594.1	glycosyltransferase	86.6	14.3	39.1
MGA_985	LOCUS_09810	sequence1:1033168..1033341(+)	frameshift		1033048	WP_011861594.1	glycosyltransferase	73.7	5.5	61.9
MGA_986	LOCUS_09820	sequence1:1033349..1034218(-)	frameshift		1034274	WP_100190734.1	IS3 family transposase	99.0	54.8	66.4
MGA_987	LOCUS_09830	sequence1:1034233..1034919(-)	frameshift		1034274	WP_100190734.1	IS3 family transposase	96.1	42.0	64.8
MGA_988	LOCUS_09840	sequence1:1035101..1036621(+)	partial			WP_010964869.1	glycosyltransferase	95.5	64.0	32.0
MGA_990	LOCUS_09860	sequence1:1038529..1039587(+)	partial			WP_164930947.1	diguanylate cyclase	71.3	59.9	29.1
MGA_1032	LOCUS_10280	sequence1:1081536..1082600(-)	partial			WP_011101249.1	hypothetical protein	68.4	76.4	28.4
MGA_1036	LOCUS_10320	sequence1:1086434..1086673(-)	internal_stop_codon	1086692..1086694(-)		WP_002263264.1	Fic family protein	100.0	39.8	43.8
MGA_1037	LOCUS_10330	sequence1:1086692..1087036(-)	internal_stop_codon	1086692..1086694(-)		WP_000599739.1	Fic family protein	100.0	56.7	58.8
MGA_1055	LOCUS_10510	sequence1:1106313..1106792(+)	partial			WP_002263028.1	cysteine synthase A	95.0	48.7	49.0
MGA_1058	LOCUS_10540	sequence1:1108155..1108448(-)	frameshift,internal_stop_codon	1108481..1108483(-)	1108104,1108510,1108159	WP_012775524.1	SNF2-related protein	99.0	4.2	94.8
MGA_1117	LOCUS_11130	sequence1:1165585..1165842(-)	partial			WP_012028182.1	8-oxo-dGTP diphosphatase	100.0	54.8	81.2
MGA_1118	LOCUS_11140	sequence1:1166169..1168331(-)	partial			WP_010989556.1	ABC transporter ATP-binding protein/permease	65.6	68.2	25.2
MGA_1120	LOCUS_11160	sequence1:1168948..1169148(-)	partial			WP_000564846.1	ISAs1-like element IS1548 family transposase	98.5	17.2	78.5
MGA_1123	LOCUS_11190	sequence1:1170529..1171554(-)	partial			WP_002263742.1	thioredoxin family protein	68.9	67.6	36.4
MGA_1127	LOCUS_11230	sequence1:1173157..1173333(+)	partial			WP_003082313.1	peptide cleavage/export ABC transporter	75.9	6.0	93.2
MGA_1132	LOCUS_11280	sequence1:1174881..1175546(-)	partial			WP_000745322.1	CPBP family intramembrane metalloprotease	65.2	57.4	30.2
MGA_1134	LOCUS_11300	sequence1:1176038..1176328(-)	partial			WP_093651299.1	group II intron reverse transcriptase/maturase	100.0	25.4	91.7
MGA_1135	LOCUS_11310	sequence1:1176517..1177026(-)	frameshift,internal_stop_codon	1177108..1177110(-)	1177129	WP_115265112.1	IS630 family transposase	99.4	48.0	78.6
MGA_1136	LOCUS_11320	sequence1:1177067..1177573(-)	frameshift,internal_stop_codon	1177108..1177110(-)	1177135	WP_115265112.1	IS630 family transposase	97.6	46.9	57.9
MGA_1137	LOCUS_11330	sequence1:1177589..1178404(-)	partial			WP_221913022.1	group II intron reverse transcriptase/maturase	97.4	63.1	91.8
MGA_1147	LOCUS_11430	sequence1:1184084..1184905(+)	internal_stop_codon	1184903..1184905(+)		WP_000801593.1	competence pheromone export protein ComB	97.1	58.4	39.6
MGA_1148	LOCUS_11440	sequence1:1184978..1185445(+)	partial			WP_002263739.1	HlyD family efflux transporter periplasmic adaptor subunit	92.3	42.4	53.8
MGA_1155	LOCUS_11510	sequence1:1189478..1190041(-)	partial			WP_093958851.1	SAG1250 family conjugative relaxase	56.7	16.9	68.9
MGA_1156	LOCUS_11520	sequence1:1189938..1190288(+)	frameshift		1190249	WP_074390220.1	IS630 family transposase	91.4	37.6	86.8
MGA_1196	LOCUS_11920	sequence1:1229225..1229413(-)	partial			WP_012775169.1	DUF2087 domain-containing protein	91.9	64.8	98.2
MGA_1206	LOCUS_12020	sequence1:1238676..1240199(-)	partial			WP_013226019.1	CehA/McbA family metallohydrolase	48.3	45.0	28.2
MGA_1207	LOCUS_12030	sequence1:1240213..1241535(-)	partial			WP_152358733.1	sugar ABC transporter substrate-binding protein	77.3	74.4	25.7
MGA_1270	LOCUS_12660	sequence1:1309073..1311049(-)	partial			WP_000910350.1	site-specific DNA-methyltransferase	72.3	73.8	39.4
MGA_1301	LOCUS_12970	sequence1:1343261..1344823(+)	partial			WP_012048252.1	LytS/YhcK type 5TM receptor domain-containing protein	39.2	35.7	29.9
MGA_1312	LOCUS_13080	sequence1:1354317..1354592(-)	internal_stop_codon	1354704..1354706(-)		WP_012775247.1	DUF3955 domain-containing protein	98.9	57.0	90.0
MGA_1353	LOCUS_13490	sequence1:1397306..1397818(+)	partial			WP_011921673.1	IS110 family transposase	99.4	43.7	96.4
MGA_1354	LOCUS_13500	sequence1:1398308..1398658(-)	frameshift		1398346	WP_074390220.1	IS630 family transposase	91.4	37.6	87.7
MGA_1355	LOCUS_13510	sequence1:1398708..1399376(+)	partial			WP_012775668.1	IS110 family transposase	100.0	57.0	90.6
MGA_1411	LOCUS_14070	sequence1:1453641..1454393(-)	frameshift		1454412	WP_012775456.1	IS4 family transposase	100.0	58.3	91.2
MGA_1412	LOCUS_14080	sequence1:1454410..1454931(-)	frameshift		1454418	WP_012775456.1	IS4 family transposase	100.0	40.3	91.3
MGA_1422	LOCUS_14180	sequence1:1463654..1464547(-)	partial			WP_003644571.1	glycosyltransferase	76.4	72.4	40.6
MGA_1424	LOCUS_14200	sequence1:1465670..1466713(-)	partial			WP_011836406.1	glycosyltransferase family 2 protein	62.2	72.3	33.0
MGA_1426	LOCUS_14220	sequence1:1467750..1468109(-)	frameshift		1468330	WP_008765273.1	beta-1,6-N-acetylglucosaminyltransferase	77.3	30.9	33.7
MGA_1427	LOCUS_14230	sequence1:1468268..1468576(-)	frameshift,internal_stop_codon	1468598..1468600(-)	1468345	WP_008767582.1	beta-1,6-N-acetylglucosaminyltransferase	89.2	28.9	36.2
MGA_1430	LOCUS_14260	sequence1:1469910..1470395(-)	partial			WP_011922115.1	glycosyltransferase family 1 protein	88.2	35.7	71.8
MGA_1522	LOCUS_15180	sequence1:1555455..1556249(-)	partial			WP_000738394.1	hypothetical protein	64.8	58.8	23.7
MGA_1551	LOCUS_15470	sequence1:1587096..1587842(-)	partial			WP_001097917.1	AraC family transcriptional regulator	73.4	44.3	31.3
MGA_1556	LOCUS_15520	sequence1:1591843..1593216(-)	partial			WP_003971589.1	extracellular solute-binding protein	57.1	60.1	22.4
MGA_1592	LOCUS_15880	sequence1:1628836..1629573(-)	partial			WP_010922446.1	glucosaminidase domain-containing protein	95.9	57.4	27.6
MGA_1613	LOCUS_16090	sequence1:1646656..1648326(-)	partial			WP_081708749.1	polymorphic toxin type 50 domain-containing protein	62.2	73.5	38.8
MGA_1619	LOCUS_16150	sequence1:1653558..1653866(-)	partial			WP_000793494.1	DUF1372 family protein	71.6	67.0	56.2
MGA_1625	LOCUS_16210	sequence1:1657383..1658081(-)	partial			WP_000031367.1	ERF family protein	64.2	70.6	55.0
MGA_1679	LOCUS_16750	sequence1:1699740..1704197(-)	partial			WP_011031383.1	carbohydrate binding domain-containing protein	41.6	67.9	46.9
MGA_1695	LOCUS_16910	sequence1:1727271..1728551(-)	partial			WP_002681132.1	DNA methyltransferase	96.2	45.6	28.4
MGA_1711	LOCUS_17070	sequence1:1748142..1749260(-)	partial			WP_010879175.1	vtpJ-therm	42.7	44.5	30.2
MGA_1715	LOCUS_17110	sequence1:1751188..1751334(-)	partial			WP_011921899.1	SDR family NAD(P)-dependent oxidoreductase	97.9	16.3	95.7
MGA_1749	LOCUS_17450	sequence1:1781195..1782949(+)	partial			WP_011459240.1	IS1634 family transposase	74.8	75.9	24.7
MGA_1798	LOCUS_17940	sequence1:1836386..1838833(-)	partial			WP_011039046.1	beta-xylosidase	41.7	63.9	26.8
MGA_1802	LOCUS_17980	sequence1:1842518..1843714(-)	partial			WP_173668699.1	lactonase family protein	85.7	72.7	29.9
MGA_1807	LOCUS_18030	sequence1:1848246..1850126(-)	partial			WP_003549922.1	PTS beta-glucoside transporter subunit IIBCA	72.4	71.8	35.2
MGA_1808	LOCUS_18040	sequence1:1850565..1851035(-)	partial			WP_011109309.1	ATP-binding protein	88.5	28.8	27.1
MGA_1816	LOCUS_18120	sequence1:1858728..1859552(-)	frameshift,internal_stop_codon	1858601..1858603(-),1858613..1858615(-)	1858733	WP_001001347.1	protein kinase	99.6	55.0	35.9
MGA_1842	LOCUS_18380	sequence1:1879536..1880639(+)	partial			WP_000043255.1	CHAP domain-containing protein	88.0	62.5	63.8
MGA_1847	LOCUS_18430	sequence1:1883351..1883776(-)	frameshift		1883786,1883986	WP_011476288.1	N-acetyltransferase	98.6	69.1	42.0
MGA_1856	LOCUS_18520	sequence1:1890820..1891641(-)	frameshift		1891664	WP_221913022.1	group II intron reverse transcriptase/maturase	100.0	64.2	93.0
MGA_1857	LOCUS_18530	sequence1:1891641..1892096(-)	frameshift		1891664	WP_221913022.1	group II intron reverse transcriptase/maturase	96.7	34.8	87.8
MGA_1914	LOCUS_19100	sequence1:1944627..1944866(-)	frameshift		1944934	WP_011921818.1	GNAT family N-acetyltransferase	96.2	35.0	88.2
MGA_1915	LOCUS_19110	sequence1:1945189..1945401(-)	frameshift,internal_stop_codon	1945172..1945174(-)	1945226,1945239	WP_011921818.1	GNAT family N-acetyltransferase	77.1	24.9	96.3
MGA_1924	LOCUS_19200	sequence1:1955787..1957025(-)	partial			WP_164925485.1	LysM domain-containing protein	41.3	47.7	71.8
MGA_1970	LOCUS_19660	sequence1:2005657..2005788(-)	partial			WP_000572848.1	XRE/MutR family transcriptional regulator	95.3	14.3	56.1
MGA_2000	LOCUS_19960	sequence1:2034500..2034772(-)	partial			WP_011921721.1	competence type IV pilus minor pilin ComGD	98.9	65.9	61.8
MGA_2016	LOCUS_20120	sequence1:2055045..2055356(-)	partial			WP_012774904.1	zinc-dependent MarR family transcriptional regulator	100.0	70.1	80.6
MGA_2017	LOCUS_20130	sequence1:2056167..2056517(-)	frameshift		2056205	WP_074390220.1	IS630 family transposase	91.4	37.6	87.7
MGA_2020	LOCUS_20150	sequence1:2063707..2064288(+)	frameshift		2063669	WP_003596308.1	IS30 family transposase	89.6	52.7	46.1
MGA_2021	LOCUS_20160	sequence1:2064565..2065023(+)	partial			WP_001155321.1	IS30-like element ISSpn8 family transposase	94.1	45.1	81.8
MGA_2057	LOCUS_20520	sequence1:2088534..2088953(-)	partial			WP_002437878.1	accessory Sec system protein Asp3	97.1	71.1	40.0
MGA_2065	LOCUS_20590	sequence1:2105004..2109671(-)	partial			WP_000777402.1	SpaH/EbpB family LPXTG-anchored major pilin	27.8	79.4	28.1
MGA_2068	LOCUS_20620	sequence1:2112120..2112971(+)	partial			WP_012775391.1	class C sortase	74.6	76.9	31.2
MGA_2101	LOCUS_20950	sequence1:2151537..2152826(-)	partial			WP_012775403.1	glycoside hydrolase family 3 C-terminal domain-containing protein	96.5	51.8	92.3
MGA_2108	LOCUS_21020	sequence1:2159816..2160463(-)	partial			WP_012027860.1	thioredoxin domain-containing protein	42.3	82.1	30.9
MGA_2123	LOCUS_21170	sequence1:2173140..2174522(-)	partial			WP_000023851.1	HAMP domain-containing sensor histidine kinase	62.6	59.1	36.6
MGA_2125	LOCUS_21190	sequence1:2175414..2176184(-)	partial			WP_000843471.1	LysM domain-containing protein	46.1	58.3	53.3
MGA_2139	LOCUS_21330	sequence1:2190836..2192689(+)	partial			WP_012028056.1	YfhO family protein	99.8	71.7	79.7
MGA_2140	LOCUS_21340	sequence1:2192859..2193149(-)	internal_stop_codon	2193243..2193245(-)		WP_029172398.1	IS200/IS605-like element ISSsu4 family transposase	100.0	62.3	100.0
