{
    "type": "genome",
    "identifier": "GCF_021654575.1",
    "organism": "Desulfoluna limicola",
    "title": "Desulfoluna limicola",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Hokkaido University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_021654575.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMD00280670",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "2810562",
        "species_taxid": "2810562",
        "organism_name": "Desulfoluna limicola",
        "infraspecific_name": "strain=ASN36",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/12/02",
        "asm_name": "ASM2165457v1",
        "asm_submitter": "Hokkaido University",
        "gbrs_paired_asm": "GCA_021654575.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/021/654/575/GCF_021654575.1_ASM2165457v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "6263790",
        "genome_size_ungapped": "6263790",
        "gc_percent": "55.000000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_021654575.1-RS_2024_04_08",
        "annotation_date": "2024-04-08",
        "total_gene_count": "4831",
        "protein_coding_gene_count": "4722",
        "non_coding_gene_count": "99",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-12-02",
    "dateModified": "2021-12-02",
    "datePublished": "2021-12-02",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Desulfoluna limicola"
        ],
        "sample_taxid": [
            "2810562"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Japan:Hokkaido, Akkeshi, Lake Akkeshi"
        ],
        "sample_host_location_id": [],
        "data_size": "1.765 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 4.17,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "6263790",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "6263790",
        "N50 (bp)": "6263790",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "55.1",
        "Number of CDSs": "4983",
        "Average Protein Length": "325.7",
        "Coding Ratio (%)": "77.7",
        "Number of rRNAs": "12",
        "Number of tRNAs": "83",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Desulfoluna spongiiphila",
                "strain": "strain=AA1",
                "accession": "GCA_900101345.1",
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                "species_taxid": 419481,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 1171,
                "total_fragments": 2087,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Desulfonema ishimotonii",
                "strain": "strain=Tokyo 01",
                "accession": "GCA_003851005.1",
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                "species_taxid": 45657,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.2309,
                "matched_fragments": 68,
                "total_fragments": 2087,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Desulfosarcina widdelii",
                "strain": "strain=PP31",
                "accession": "GCA_009688965.1",
                "taxid": 947919,
                "species_taxid": 947919,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.0354,
                "matched_fragments": 81,
                "total_fragments": 2087,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Desulfobotulus alkaliphilus",
                "strain": "strain=ASO4-4",
                "accession": "GCA_007830435.1",
                "taxid": 622671,
                "species_taxid": 622671,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.7233,
                "matched_fragments": 69,
                "total_fragments": 2087,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 4.17,
            "strain_heterogeneity": 0.0
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        "gtdb_result": [
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                "accession": "GCF_900101345.1",
                "gtdb_species": "s__Desulfoluna spongiiphila",
                "ani": 81.661,
                "matched_fragments": 1173,
                "total_fragments": 2087,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobacteria;o__Desulfobacterales;f__Desulfolunaceae;g__Desulfoluna",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.60",
                "min_intra_species_ani": "98.60",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.95",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_900699765.1",
                "gtdb_species": "s__Desulfoluna butyratoxydans",
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                "matched_fragments": 1117,
                "total_fragments": 2087,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobacteria;o__Desulfobacterales;f__Desulfolunaceae;g__Desulfoluna",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_013619155.1",
                "gtdb_species": "s__Desulfoluna sp013619155",
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                "matched_fragments": 694,
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                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobacteria;o__Desulfobacterales;f__Desulfolunaceae;g__Desulfoluna",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003851005.1",
                "gtdb_species": "s__Desulfonema_B ishimotonii",
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                "matched_fragments": 69,
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                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobacteria;o__Desulfobacterales;f__Desulfococcaceae;g__Desulfonema_B",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_009688965.1",
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                "ani": 76.0361,
                "matched_fragments": 81,
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                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobacteria;o__Desulfobacterales;f__Desulfosarcinaceae;g__Desulfosarcina",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_007830435.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobacteria;o__Desulfobacterales;f__Desulforegulaceae;g__Desulfobotulus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016342285.1",
                "gtdb_species": "s__JAEINQ01 sp016342285",
                "ani": 75.6496,
                "matched_fragments": 78,
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                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobacteria;o__Desulfobacterales;f__JAEINQ01;g__JAEINQ01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_018224455.1",
                "gtdb_species": "s__Desulfosarcina sp018224455",
                "ani": 75.6272,
                "matched_fragments": 55,
                "total_fragments": 2087,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobacteria;o__Desulfobacterales;f__Desulfosarcinaceae;g__Desulfosarcina",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.042,
        "cell_length": 0.394,
        "doubling_h": null,
        "growth_tmp": 29.0,
        "optimum_tmp": 29.0,
        "optimum_ph": 6.9,
        "genome_size": 6535106.0,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.5,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Desulfoluna",
        "limicola"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}