{
    "type": "genome",
    "identifier": "GCF_021655555.1",
    "organism": "Marinagarivorans cellulosilyticus",
    "title": "Marinagarivorans cellulosilyticus",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Japan Agency for Marine-Earth Science and Technology",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_021655555.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMD00217164",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "2721545",
        "species_taxid": "2721545",
        "organism_name": "Marinagarivorans cellulosilyticus",
        "infraspecific_name": "strain=GE09",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/11/19",
        "asm_name": "ASM2165555v1",
        "asm_submitter": "Japan Agency for Marine-Earth Science and Technology",
        "gbrs_paired_asm": "GCA_021655555.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/021/655/555/GCF_021655555.1_ASM2165555v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "5311067",
        "genome_size_ungapped": "5311067",
        "gc_percent": "46.500000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_021655555.1-RS_2024_03_28",
        "annotation_date": "2024-03-28",
        "total_gene_count": "4302",
        "protein_coding_gene_count": "4231",
        "non_coding_gene_count": "57",
        "pubmed_id": "36039358"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-11-19",
    "dateModified": "2021-11-19",
    "datePublished": "2021-11-19",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Marinagarivorans cellulosilyticus"
        ],
        "sample_taxid": [
            "2721545"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Japan:Kagoshima"
        ],
        "sample_host_location_id": [],
        "data_size": "1.504 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 4.17,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "5311067",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "5311067",
        "N50 (bp)": "5311067",
        "Gap Ratio (%)": "0.000019",
        "GCcontent (%)": "46.7",
        "Number of CDSs": "4297",
        "Average Protein Length": "355.1",
        "Coding Ratio (%)": "86.2",
        "Number of rRNAs": "11",
        "Number of tRNAs": "41",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Teredinibacter haidensis",
                "strain": "strain=Bs08",
                "accession": "GCA_014211975.1",
                "taxid": 2731755,
                "species_taxid": 2731755,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.0178,
                "matched_fragments": 70,
                "total_fragments": 1770,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Marinagarivorans algicola",
                "strain": "strain=Z1",
                "accession": "GCA_001292705.1",
                "taxid": 1513270,
                "species_taxid": 1513270,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.2407,
                "matched_fragments": 239,
                "total_fragments": 1770,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Teredinibacter purpureus",
                "strain": "strain=Bs12",
                "accession": "GCA_000966245.1",
                "taxid": 2731756,
                "species_taxid": 2731756,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.5546,
                "matched_fragments": 57,
                "total_fragments": 1770,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Teredinibacter purpureus",
                "strain": "strain=Bs12",
                "accession": "GCA_014217335.1",
                "taxid": 2731756,
                "species_taxid": 2731756,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.2851,
                "matched_fragments": 55,
                "total_fragments": 1770,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Saccharophagus degradans",
                "strain": "strain=2-40",
                "accession": "GCA_000013665.1",
                "taxid": 86304,
                "species_taxid": 86304,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.2772,
                "matched_fragments": 97,
                "total_fragments": 1770,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Gilvimarinus polysaccharolyticus",
                "strain": "strain=YN3",
                "accession": "GCA_001187555.1",
                "taxid": 863921,
                "species_taxid": 863921,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.8074,
                "matched_fragments": 54,
                "total_fragments": 1770,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Agaribacterium haliotis",
                "strain": "strain=feces2",
                "accession": "GCA_002312815.1",
                "taxid": 2013869,
                "species_taxid": 2013869,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.7792,
                "matched_fragments": 58,
                "total_fragments": 1770,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 4.17,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_014211975.1",
                "gtdb_species": "s__Teredinibacter haidensis",
                "ani": 79.9714,
                "matched_fragments": 70,
                "total_fragments": 1770,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Cellvibrionaceae;g__Teredinibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.99",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_001292705.1",
                "gtdb_species": "s__Marinagarivorans algicola",
                "ani": 78.2572,
                "matched_fragments": 238,
                "total_fragments": 1770,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Cellvibrionaceae;g__Marinagarivorans",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.28",
                "min_intra_species_ani": "99.28",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_003634075.1",
                "gtdb_species": "s__Teredinibacter sp003634075",
                "ani": 78.257,
                "matched_fragments": 51,
                "total_fragments": 1770,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Cellvibrionaceae;g__Teredinibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000832015.1",
                "gtdb_species": "s__Gilvimarinus agarilyticus",
                "ani": 77.7691,
                "matched_fragments": 64,
                "total_fragments": 1770,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Cellvibrionaceae;g__Gilvimarinus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014217335.1",
                "gtdb_species": "s__Teredinibacter purpureus",
                "ani": 77.2836,
                "matched_fragments": 55,
                "total_fragments": 1770,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Cellvibrionaceae;g__Teredinibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000013665.1",
                "gtdb_species": "s__Saccharophagus degradans",
                "ani": 77.1436,
                "matched_fragments": 96,
                "total_fragments": 1770,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Cellvibrionaceae;g__Saccharophagus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.22",
                "min_intra_species_ani": "96.22",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_002312815.1",
                "gtdb_species": "s__Agaribacterium haliotis",
                "ani": 76.7745,
                "matched_fragments": 57,
                "total_fragments": 1770,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Cellvibrionaceae;g__Agaribacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001187555.1",
                "gtdb_species": "s__Gilvimarinus polysaccharolyticus",
                "ani": 76.7595,
                "matched_fragments": 54,
                "total_fragments": 1770,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Cellvibrionaceae;g__Gilvimarinus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002746115.1",
                "gtdb_species": "s__GCA-2746115 sp002746115",
                "ani": 76.1523,
                "matched_fragments": 52,
                "total_fragments": 1770,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Cellvibrionaceae;g__GCA-2746115",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Marinagarivorans",
        "cellulosilyticus"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}