{ "type": "genome", "identifier": "GCF_021725675.1", "organism": "Marilutibacter chinensis", "title": "Marilutibacter chinensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Xinjiang Academy of Agricultural Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_021725675.1", "bioproject": "PRJNA224116", "biosample": "SAMN25208335", "wgs_master": "JAKJPO000000000.1", "refseq_category": "reference genome", "taxid": "2912247", "species_taxid": "2912247", "organism_name": "Marilutibacter chinensis", "infraspecific_name": "strain=TLK-CK17", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/01/30", "asm_name": "ASM2172567v1", "asm_submitter": "Xinjiang Academy of Agricultural Sciences", "gbrs_paired_asm": "GCA_021725675.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/021/725/675/GCF_021725675.1_ASM2172567v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4300039", "genome_size_ungapped": "4300039", "gc_percent": "68.000000", "replicon_count": "0", "scaffold_count": "34", "contig_count": "34", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_021725675.1-RS_2024_05_06", "annotation_date": "2024-05-06", "total_gene_count": "3835", "protein_coding_gene_count": "3727", "non_coding_gene_count": "57", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-01-30", "dateModified": "2022-01-30", "datePublished": "2022-01-30", "_annotation": { "sample_count": 1, "sample_organism": [ "Marilutibacter chinensis" ], "sample_taxid": [ "2912247" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not collected" ], "sample_host_location_id": [], "data_size": "1.168 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 8.33, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4300039", "Number of Sequences": "34", "Longest Sequences (bp)": "1257296", "N50 (bp)": "331583", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "68.2", "Number of CDSs": "3822", "Average Protein Length": "327.9", "Coding Ratio (%)": "87.4", "Number of rRNAs": "3", "Number of tRNAs": "59", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Lysobacter chinensis", "strain": "strain=TLK-CK17", "accession": "GCA_021725675.1", "taxid": 2912247, "species_taxid": 2912247, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter silvisoli", "strain": "strain=zong2l5", "accession": "GCA_003382365.1", "taxid": 2293254, "species_taxid": 2293254, "relation_to_type": "type", "validated": true, "ani": 81.745, "matched_fragments": 790, "total_fragments": 1417, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter niastensis", "strain": "strain=DSM 18481", "accession": "GCA_015453285.1", "taxid": 380629, "species_taxid": 380629, "relation_to_type": "type", "validated": true, "ani": 81.6488, "matched_fragments": 677, "total_fragments": 1417, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter luteus", "strain": "strain=CECT 30171", "accession": "GCA_907164845.1", "taxid": 2822368, "species_taxid": 2822368, "relation_to_type": "type", "validated": true, "ani": 81.4422, "matched_fragments": 612, "total_fragments": 1417, "ani_threshold": 95, "status": "below_threshold" }, { 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