{ "type": "genome", "identifier": "GCF_021729135.1", "organism": "Brevibacterium daeguense", "title": "Brevibacterium daeguense", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Chinese Academy of Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_021729135.1", "bioproject": "PRJNA224116", "biosample": "SAMN24425645", "wgs_master": "JAJTWW000000000.1", "refseq_category": "reference genome", "taxid": "909936", "species_taxid": "909936", "organism_name": "Brevibacterium daeguense", "infraspecific_name": "strain=DSM 27938", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/01/30", "asm_name": "ASM2172913v1", "asm_submitter": "University of Chinese Academy of Sciences", "gbrs_paired_asm": "GCA_021729135.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/021/729/135/GCF_021729135.1_ASM2172913v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3555487", "genome_size_ungapped": "3555487", "gc_percent": "68.000000", "replicon_count": "0", "scaffold_count": "56", "contig_count": "56", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_021729135.1-RS_2024_08_06", "annotation_date": "2024-08-06", "total_gene_count": "3206", "protein_coding_gene_count": "3123", "non_coding_gene_count": "53", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-01-30", "dateModified": "2022-01-30", "datePublished": "2022-01-30", "_annotation": { "sample_count": 1, "sample_organism": [ "Brevibacterium daeguense" ], "sample_taxid": [ "909936" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Daegu" ], "sample_host_location_id": [], "data_size": "0.970 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3555487", "Number of Sequences": "56", "Longest Sequences (bp)": "720463", "N50 (bp)": "207013", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "67.9", "Number of CDSs": "3165", "Average Protein Length": "337.1", "Coding Ratio (%)": "90.0", "Number of rRNAs": "3", "Number of tRNAs": "52", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Brevibacterium daeguense", "strain": "strain=DSM 27938", "accession": "GCA_021729135.1", "taxid": 909936, "species_taxid": 909936, 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"matched_fragments": 420, "total_fragments": 1162, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacterium gallinarum", "strain": "strain=Re57", "accession": "GCA_014836885.1", "taxid": 2762220, "species_taxid": 2762220, "relation_to_type": "type", "validated": true, "ani": 79.3154, "matched_fragments": 444, "total_fragments": 1162, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacterium rongguiense", "strain": "strain=5221", "accession": "GCA_009857845.1", "taxid": 2695267, "species_taxid": 2695267, "relation_to_type": "type", "validated": true, "ani": 78.9368, "matched_fragments": 401, "total_fragments": 1162, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacterium senegalense", "strain": "strain=JC43", "accession": "GCA_000285835.2", "taxid": 1033736, "species_taxid": 1033736, "relation_to_type": "type", "validated": true, "ani": 78.246, "matched_fragments": 382, "total_fragments": 1162, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacterium limosum", "strain": "strain=o2", "accession": "GCA_011617705.1", "taxid": 2697565, "species_taxid": 2697565, "relation_to_type": "type", "validated": true, "ani": 78.1978, "matched_fragments": 320, "total_fragments": 1162, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacterium atlanticum", "strain": "strain=WO024", "accession": "GCA_011617245.1", "taxid": 2697563, "species_taxid": 2697563, "relation_to_type": "type", "validated": true, "ani": 78.1383, "matched_fragments": 341, "total_fragments": 1162, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sediminivirga luteola", "strain": "strain=CGMCC 1.12785", "accession": "GCA_014639315.1", "taxid": 1774748, "species_taxid": 1774748, "relation_to_type": "type", "validated": true, "ani": 78.014, "matched_fragments": 254, "total_fragments": 1162, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sediminivirga luteola", "strain": "strain=CGMCC 1.12785", "accession": "GCA_021729215.1", "taxid": 1774748, "species_taxid": 1774748, "relation_to_type": "type", "validated": true, "ani": 78.0067, "matched_fragments": 253, "total_fragments": 1162, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacterium zhoupengii", "strain": "strain=HY170", "accession": "GCA_021117425.1", "taxid": 2898795, "species_taxid": 2898795, "relation_to_type": "type", "validated": true, "ani": 77.6791, "matched_fragments": 267, "total_fragments": 1162, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Occultella glacieicola", "strain": "strain=T3246-1", "accession": "GCA_004353825.1", "taxid": 2518684, "species_taxid": 2518684, "relation_to_type": "type", "validated": true, "ani": 76.487, "matched_fragments": 196, "total_fragments": 1162, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinokineospora spheciospongiae", "strain": "strain=EG49", "accession": "GCA_000564855.1", "taxid": 909613, "species_taxid": 909613, "relation_to_type": "type", "validated": true, "ani": 76.4276, "matched_fragments": 198, "total_fragments": 1162, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces mangrovisoli", "strain": "strain=MUSC 149", "accession": "GCA_000974985.2", "taxid": 1428628, "species_taxid": 1428628, "relation_to_type": "type", "validated": true, "ani": 76.0263, "matched_fragments": 203, "total_fragments": 1162, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptacidiphilus anmyonensis", "strain": "strain=NBRC 103185", "accession": "GCA_000787855.1", "taxid": 405782, "species_taxid": 405782, "relation_to_type": "type", "validated": true, "ani": 75.9751, "matched_fragments": 202, "total_fragments": 1162, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_005280295.1", "gtdb_species": "s__Brevibacterium sp005280295", "ani": 80.9703, "matched_fragments": 613, "total_fragments": 1162, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Brevibacteriaceae;g__Brevibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900184225.1", "gtdb_species": "s__Brevibacterium ihuae", "ani": 80.8087, "matched_fragments": 589, "total_fragments": 1162, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Brevibacteriaceae;g__Brevibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, 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