{ "type": "genome", "identifier": "GCF_021729195.1", "organism": "Spelaeicoccus albus", "title": "Spelaeicoccus albus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Chinese Academy of Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_021729195.1", "bioproject": "PRJNA224116", "biosample": "SAMN24394420", "wgs_master": "JAJTWV000000000.1", "refseq_category": "na", "taxid": "1280376", "species_taxid": "1280376", "organism_name": "Spelaeicoccus albus", "infraspecific_name": "strain=DSM 26341", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/01/30", "asm_name": "ASM2172919v1", "asm_submitter": "University of Chinese Academy of Sciences", "gbrs_paired_asm": "GCA_021729195.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/021/729/195/GCF_021729195.1_ASM2172919v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4017282", "genome_size_ungapped": "4017282", "gc_percent": "64.500000", "replicon_count": "0", "scaffold_count": "111", "contig_count": "111", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_021729195.1-RS_2024_08_29", "annotation_date": "2024-08-29", "total_gene_count": "3786", "protein_coding_gene_count": "3701", "non_coding_gene_count": "52", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-01-30", "dateModified": "2022-01-30", "datePublished": "2022-01-30", "_annotation": { "sample_count": 1, "sample_organism": [ "Spelaeicoccus albus" ], "sample_taxid": [ "1280376" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "1.121 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4017282", "Number of Sequences": "111", "Longest Sequences (bp)": "232843", "N50 (bp)": "61951", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "64.5", "Number of CDSs": "3705", "Average Protein Length": "327.5", "Coding Ratio (%)": "90.6", "Number of rRNAs": "3", "Number of tRNAs": "48", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Spelaeicoccus albus", "strain": "strain=DSM 26341", "accession": "GCA_021729195.1", "taxid": 1280376, "species_taxid": 1280376, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1279, 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"GCA_021049285.1", "taxid": 2897773, "species_taxid": 2897773, "relation_to_type": "type", "validated": true, "ani": 76.4103, "matched_fragments": 79, "total_fragments": 1288, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedococcus dokdonensis", "strain": "strain=DSM 22329", "accession": "GCA_900104525.1", "taxid": 443156, "species_taxid": 443156, "relation_to_type": "type", "validated": true, "ani": 76.381, "matched_fragments": 108, "total_fragments": 1288, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sinomonas mesophila", "strain": "strain=MPKL 26", "accession": "GCA_001999765.1", "taxid": 1531955, "species_taxid": 1531955, "relation_to_type": "type", "validated": true, "ani": 76.3605, "matched_fragments": 125, "total_fragments": 1288, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clavibacter californiensis", "strain": "strain=CFBP 8216", "accession": "GCA_003576155.1", "taxid": 1401995, "species_taxid": 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76.0919, "matched_fragments": 152, "total_fragments": 1288, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Motilibacter aurantiacus", "strain": "strain=K478", "accession": "GCA_011250645.1", "taxid": 2714955, "species_taxid": 2714955, "relation_to_type": "type", "validated": true, "ani": 75.9799, "matched_fragments": 102, "total_fragments": 1288, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kineosporia rhizophila", "strain": "strain=JCM 9960", "accession": "GCA_021277265.1", "taxid": 84633, "species_taxid": 84633, "relation_to_type": "type", "validated": true, "ani": 75.9547, "matched_fragments": 128, "total_fragments": 1288, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Janibacter hoylei", "strain": "strain=PVAS-1", "accession": "GCA_000297495.1", "taxid": 364298, "species_taxid": 364298, "relation_to_type": "type", "validated": true, "ani": 75.827, "matched_fragments": 100, "total_fragments": 1288, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces cacaoi", "strain": "strain=DSM 40057", "accession": "GCA_013004455.1", "taxid": 1898, "species_taxid": 1898, "relation_to_type": "type", "validated": true, "ani": 75.5134, "matched_fragments": 136, "total_fragments": 1288, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces cacaoi", "strain": "strain=NRRL B-1220", "accession": "GCA_002154495.1", "taxid": 1898, "species_taxid": 1898, "relation_to_type": "type", "validated": true, "ani": 75.4885, "matched_fragments": 125, "total_fragments": 1288, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces cacaoi", "strain": "strain=NBRC 12748", "accession": "GCA_006539165.1", "taxid": 1898, "species_taxid": 1898, "relation_to_type": "type", "validated": true, "ani": 75.4389, "matched_fragments": 141, "total_fragments": 1288, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { 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