{
    "type": "genome",
    "identifier": "GCF_021730445.1",
    "organism": "Phocaeicola faecalis",
    "title": "Phocaeicola faecalis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "jiangnan",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_021730445.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN16481399",
        "wgs_master": "JADNRM000000000.1",
        "refseq_category": "reference genome",
        "taxid": "2786956",
        "species_taxid": "2786956",
        "organism_name": "Phocaeicola faecalis",
        "infraspecific_name": "strain=FXJYN30E22",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/01/31",
        "asm_name": "ASM2173044v1",
        "asm_submitter": "jiangnan",
        "gbrs_paired_asm": "GCA_021730445.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/021/730/445/GCF_021730445.1_ASM2173044v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4318148",
        "genome_size_ungapped": "4318133",
        "gc_percent": "43.000000",
        "replicon_count": "0",
        "scaffold_count": "65",
        "contig_count": "65",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_021730445.1-RS_2024_10_25",
        "annotation_date": "2024-10-25",
        "total_gene_count": "3619",
        "protein_coding_gene_count": "3442",
        "non_coding_gene_count": "81",
        "pubmed_id": "34129122"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-01-31",
    "dateModified": "2022-01-31",
    "datePublished": "2022-01-31",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Phocaeicola faecalis"
        ],
        "sample_taxid": [
            "2786956"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China"
        ],
        "sample_host_location_id": [],
        "data_size": "1.230 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4318148",
        "Number of Sequences": "65",
        "Longest Sequences (bp)": "983340",
        "N50 (bp)": "174088",
        "Gap Ratio (%)": "0.002362",
        "GCcontent (%)": "43.0",
        "Number of CDSs": "3440",
        "Average Protein Length": "366.0",
        "Coding Ratio (%)": "87.5",
        "Number of rRNAs": "4",
        "Number of tRNAs": "73",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
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                "status": "below_threshold"
            },
            {
                "organism_name": "Parabacteroides merdae",
                "strain": "strain=ATCC 43184",
                "accession": "GCA_025151215.1",
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                "species_taxid": 46503,
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                "status": "below_threshold"
            },
            {
                "organism_name": "Phocaeicola vulgatus",
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                "species_taxid": 821,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.7208,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Phocaeicola sartorii",
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                "species_taxid": 671267,
                "relation_to_type": "type",
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                "matched_fragments": 595,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Phocaeicola sartorii",
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                "accession": "GCA_024622025.1",
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                "species_taxid": 671267,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 592,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacteroides humanifaecis",
                "strain": "strain=KGMB07931",
                "accession": "GCA_017309675.2",
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                "species_taxid": 2792859,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.6135,
                "matched_fragments": 201,
                "total_fragments": 1417,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.0,
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Phocaeicola",
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Phocaeicola",
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                "mean_intra_species_ani": "N/A",
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    },
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    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}